(31 nodes) Ribonuclease H-like superfamily network (Micromonas commoda)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MICPUN_56850	3'-5' exonuclease domain-containing protein. (316 aa)
	MICPUN_113410	Argonuate group protein. (933 aa)
	MICPUN_70448	C2H2-type domain-containing protein. (260 aa)
	MICPUN_107163	MPN domain-containing protein. (2336 aa)
	MICPUN_67391	HRDC domain-containing protein. (332 aa)
	MICPUN_62854	Uncharacterized protein. (1227 aa)
	MICPUN_99943	3'-5' exonuclease domain-containing protein. (725 aa)
	MICPUN_80526	Exonuclease. (279 aa)
	MICPUN_57902	SAP domain-containing protein. (595 aa)
	MICPUN_105535	Transcription elongation-nucleosome displacement protein. (1566 aa)
	MICPUN_97378	DNA polymerase. (1147 aa)
	MICPUN_59630	DNA polymerase. (1643 aa)
	MICPUN_59788	3'-5' exonuclease domain-containing protein. (503 aa)
	MICPUN_61432	Uncharacterized protein. (405 aa)
	MICPUN_61584	3'-5' exonuclease domain-containing protein. (1648 aa)
	MICPUN_62284	DRBM domain-containing protein. (514 aa)
	MICPUN_75058	DNA polymerase. (768 aa)
	CAF1.1	Ribonuclease. (832 aa)
	MICPUN_104126	POLAc domain-containing protein. (972 aa)
	MICPUN_64549	Uncharacterized protein. (1038 aa)
	REX	Exonuclease and DNA helicase. (1473 aa)
	CAF1.2	Uncharacterized protein. (273 aa)
	MICPUN_105055	RNase H domain-containing protein. (265 aa)
	MICPUN_77631	Exonuclease domain-containing protein. (204 aa)
	RNHB	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (262 aa)
	MICPUN_84415	Exonuclease domain-containing protein. (153 aa)
	MICPUN_101995	Cauli_VI domain-containing protein. (1349 aa)
	MICPUN_97993	S1 motif domain-containing protein. (768 aa)
	MICPUN_63343	Exonuclease domain-containing protein. (276 aa)
	MICPUN_63195	3'-5' exonuclease domain-containing protein. (519 aa)
	MICPUN_63095	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2478 aa)

Your Current Organism:

Micromonas commoda

NCBI taxonomy Id: 296587
Other names: CCMP2709, M. commoda, Micromonas commoda van Baren, Bachy & Worden, 2016, Micromonas pusilla NOUM17, Micromonas pusilla RCC299, Micromonas sp. CCMP1195, Micromonas sp. CCMP1764, Micromonas sp. CCMP492, Micromonas sp. NEPCC29, Micromonas sp. RCC 299, Micromonas sp. RCC299, Micromonas sp. RCC372, Micromonas sp. RCC447, Micromonas sp. RCC448, Micromonas sp. RCC449, Micromonas sp. RCC450, Micromonas sp. RCC472, Micromonas sp. RCC570, Micromonas sp. RCC676, Micromonas sp. RCC803, Micromonas sp. RCC804, Micromonas sp. RCC805, Micromonas sp. RCC808, Micromonas sp. RCC836, RCC299

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAF1.1	CAF1.2	C1EH78	C1FE86	Ribonuclease.	Uncharacterized protein.	0.461
CAF1.1	MICPUN_113410	C1EH78	C1DZY0	Ribonuclease.	Argonuate group protein.	0.533
CAF1.1	MICPUN_67391	C1EH78	C1E3A4	Ribonuclease.	HRDC domain-containing protein.	0.416
CAF1.1	MICPUN_77631	C1EH78	C1FEW4	Ribonuclease.	Exonuclease domain-containing protein.	0.497
CAF1.2	CAF1.1	C1FE86	C1EH78	Uncharacterized protein.	Ribonuclease.	0.461
CAF1.2	MICPUN_59630	C1FE86	C1E975	Uncharacterized protein.	DNA polymerase.	0.570
CAF1.2	MICPUN_77631	C1FE86	C1FEW4	Uncharacterized protein.	Exonuclease domain-containing protein.	0.618
MICPUN_101995	MICPUN_59630	C1FGI2	C1E975	Cauli_VI domain-containing protein.	DNA polymerase.	0.516
MICPUN_101995	MICPUN_62284	C1FGI2	C1EDI7	Cauli_VI domain-containing protein.	DRBM domain-containing protein.	0.591
MICPUN_101995	MICPUN_67391	C1FGI2	C1E3A4	Cauli_VI domain-containing protein.	HRDC domain-containing protein.	0.632
MICPUN_101995	RNHB	C1FGI2	C1FF37	Cauli_VI domain-containing protein.	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	0.848
MICPUN_105535	MICPUN_67391	C1E5G2	C1E3A4	Transcription elongation-nucleosome displacement protein.	HRDC domain-containing protein.	0.497
MICPUN_113410	CAF1.1	C1DZY0	C1EH78	Argonuate group protein.	Ribonuclease.	0.533
MICPUN_57902	MICPUN_67391	C1E442	C1E3A4	SAP domain-containing protein.	HRDC domain-containing protein.	0.502
MICPUN_57902	MICPUN_84415	C1E442	C1FFF1	SAP domain-containing protein.	Exonuclease domain-containing protein.	0.906
MICPUN_59630	CAF1.2	C1E975	C1FE86	DNA polymerase.	Uncharacterized protein.	0.570
MICPUN_59630	MICPUN_101995	C1E975	C1FGI2	DNA polymerase.	Cauli_VI domain-containing protein.	0.516
MICPUN_59630	MICPUN_62284	C1E975	C1EDI7	DNA polymerase.	DRBM domain-containing protein.	0.794
MICPUN_59630	MICPUN_63095	C1E975	C1FJ68	DNA polymerase.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.990
MICPUN_59630	MICPUN_75058	C1E975	C1EFP4	DNA polymerase.	DNA polymerase.	0.435

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