(17 nodes) Mixed, incl. Four-carbon acid sugar kinase, N-terminal domain, and RuBisCO network (Polaromonas sp. JS666)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Bpro_0031	Type III effector Hrp-dependent outers domain protein. (449 aa)
	Bpro_0032	Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; Belongs to the RuBisCO large chain family. (428 aa)
	Bpro_0033	Conserved hypothetical protein. (179 aa)
	Bpro_0036	Transcriptional regulator, LacI family. (354 aa)
	Bpro_0087	Conserved hypothetical protein. (276 aa)
	Bpro_0088	TRAP dicarboxylate transporter, DctP subunit. (331 aa)
	Bpro_0089	Tripartite ATP-independent periplasmic transporter, DctQ component. (188 aa)
	Bpro_0090	TRAP dicarboxylate transporter- DctM subunit. (446 aa)
	Bpro_0092	Short-chain dehydrogenase/reductase SDR. (253 aa)
	Bpro_0093	Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; Belongs to the RuBisCO large chain family. (413 aa)
	Bpro_0094	Type III effector Hrp-dependent outers domain protein. (457 aa)
	Bpro_0095	Transcriptional regulator, GntR family. (237 aa)
	Bpro_4876	Hydroxypyruvate isomerase; Belongs to the hyi family. (273 aa)
	Bpro_4877	Class II aldolase/adducin-like protein. (224 aa)
	Bpro_4878	Type III effector Hrp-dependent outers domain protein. (427 aa)
	Bpro_4879	NAD-dependent epimerase/dehydratase. (339 aa)
	Bpro_4883	3-hydroxyisobutyrate dehydrogenase. (298 aa)

Your Current Organism:

Polaromonas sp. JS666

NCBI taxonomy Id: 296591
Other names: P. sp. JS666

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Bpro_0031	Bpro_0032	Type III effector Hrp-dependent outers domain protein.	Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; Belongs to the RuBisCO large chain family.	0.949
Bpro_0031	Bpro_0033	Type III effector Hrp-dependent outers domain protein.	Conserved hypothetical protein.	0.902
Bpro_0031	Bpro_0036	Type III effector Hrp-dependent outers domain protein.	Transcriptional regulator, LacI family.	0.736
Bpro_0031	Bpro_0087	Type III effector Hrp-dependent outers domain protein.	Conserved hypothetical protein.	0.791
Bpro_0031	Bpro_0093	Type III effector Hrp-dependent outers domain protein.	Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; Belongs to the RuBisCO large chain family.	0.785
Bpro_0031	Bpro_4877	Type III effector Hrp-dependent outers domain protein.	Class II aldolase/adducin-like protein.	0.780
Bpro_0031	Bpro_4879	Type III effector Hrp-dependent outers domain protein.	NAD-dependent epimerase/dehydratase.	0.445
Bpro_0032	Bpro_0031	Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; Belongs to the RuBisCO large chain family.	Type III effector Hrp-dependent outers domain protein.	0.949
Bpro_0032	Bpro_0033	Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; Belongs to the RuBisCO large chain family.	Conserved hypothetical protein.	0.915
Bpro_0032	Bpro_0036	Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; Belongs to the RuBisCO large chain family.	Transcriptional regulator, LacI family.	0.741
Bpro_0032	Bpro_0087	Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; Belongs to the RuBisCO large chain family.	Conserved hypothetical protein.	0.791
Bpro_0032	Bpro_0093	Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; Belongs to the RuBisCO large chain family.	Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; Belongs to the RuBisCO large chain family.	0.905
Bpro_0032	Bpro_0094	Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; Belongs to the RuBisCO large chain family.	Type III effector Hrp-dependent outers domain protein.	0.785
Bpro_0032	Bpro_4877	Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; Belongs to the RuBisCO large chain family.	Class II aldolase/adducin-like protein.	0.521
Bpro_0032	Bpro_4878	Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; Belongs to the RuBisCO large chain family.	Type III effector Hrp-dependent outers domain protein.	0.483
Bpro_0033	Bpro_0031	Conserved hypothetical protein.	Type III effector Hrp-dependent outers domain protein.	0.902
Bpro_0033	Bpro_0032	Conserved hypothetical protein.	Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; Belongs to the RuBisCO large chain family.	0.915
Bpro_0033	Bpro_0036	Conserved hypothetical protein.	Transcriptional regulator, LacI family.	0.780
Bpro_0036	Bpro_0031	Transcriptional regulator, LacI family.	Type III effector Hrp-dependent outers domain protein.	0.736
Bpro_0036	Bpro_0032	Transcriptional regulator, LacI family.	Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; Belongs to the RuBisCO large chain family.	0.741