STRINGSTRING
copA_1 copA_1 SIS40567.1 SIS40567.1 SIS40578.1 SIS40578.1 SIS40588.1 SIS40588.1 SIS40604.1 SIS40604.1 vfr vfr SIS44666.1 SIS44666.1 SIS44675.1 SIS44675.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
copA_1Copper-resistance protein, CopA family. (925 aa)
SIS40567.1Por secretion system C-terminal sorting domain-containing protein. (256 aa)
SIS40578.1Hypothetical protein. (175 aa)
SIS40588.1YceI-like domain-containing protein. (181 aa)
SIS40604.1Hypothetical protein. (282 aa)
vfrCRP/FNR family transcriptional regulator, anaerobic regulatory protein. (219 aa)
SIS44666.1Cytochrome c5. (95 aa)
SIS44675.1Hypothetical protein. (96 aa)
Your Current Organism:
Chryseobacterium shigense
NCBI taxonomy Id: 297244
Other names: C. shigense, Chryseobacterium shigense Shimomura et al. 2005 emend. Montero-Calasanz et al. 2014, Chryseobacterium sp. 1107B-08, Chryseobacterium sp. 628-2-08, Chryseobacterium sp. 664-09, Chryseobacterium sp. 972B-08, DSM 17126, NCIMB 14047, strain GUM-Kaji
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