STRINGSTRING
yjiR_3 yjiR_3 SIS28199.1 SIS28199.1 SIS28202.1 SIS28202.1 ypeA ypeA norG norG yjiR_1 yjiR_1 SIS29527.1 SIS29527.1 ridA ridA SIS30395.1 SIS30395.1 SIS36333.1 SIS36333.1 ydcR ydcR
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
yjiR_3Transcriptional regulator, GntR family. (470 aa)
SIS28199.1Permease of the drug/metabolite transporter (DMT) superfamily. (294 aa)
SIS28202.1Hypothetical protein. (70 aa)
ypeAAcetyltransferase (GNAT) family protein. (148 aa)
norGGntR family transcriptional regulator / MocR family aminotransferase. (482 aa)
yjiR_1DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain. (476 aa)
SIS29527.1Hypothetical protein. (171 aa)
ridAEnamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family. (168 aa)
SIS30395.1Threonine/homoserine/homoserine lactone efflux protein. (211 aa)
SIS36333.1Hypothetical protein. (160 aa)
ydcRTranscriptional regulator, GntR family. (471 aa)
Your Current Organism:
Chryseobacterium shigense
NCBI taxonomy Id: 297244
Other names: C. shigense, Chryseobacterium shigense Shimomura et al. 2005 emend. Montero-Calasanz et al. 2014, Chryseobacterium sp. 1107B-08, Chryseobacterium sp. 628-2-08, Chryseobacterium sp. 664-09, Chryseobacterium sp. 972B-08, DSM 17126, NCIMB 14047, strain GUM-Kaji
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