STRINGSTRING
ydcR ydcR gabR_2 gabR_2 gabR_1 gabR_1 norG norG yjiR_1 yjiR_1 lutR_2 lutR_2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ydcRTranscriptional regulator, GntR family. (471 aa)
gabR_2GntR family transcriptional regulator / MocR family aminotransferase. (481 aa)
gabR_1GntR family transcriptional regulator / MocR family aminotransferase. (495 aa)
norGGntR family transcriptional regulator / MocR family aminotransferase. (482 aa)
yjiR_1DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain. (476 aa)
lutR_2DNA-binding transcriptional regulator, FadR family. (218 aa)
Your Current Organism:
Chryseobacterium shigense
NCBI taxonomy Id: 297244
Other names: C. shigense, Chryseobacterium shigense Shimomura et al. 2005 emend. Montero-Calasanz et al. 2014, Chryseobacterium sp. 1107B-08, Chryseobacterium sp. 628-2-08, Chryseobacterium sp. 664-09, Chryseobacterium sp. 972B-08, DSM 17126, NCIMB 14047, strain GUM-Kaji
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