STRINGSTRING
yybR_3 yybR_3 ntcA_1 ntcA_1 SIS31032.1 SIS31032.1 gabR_2 gabR_2 SIS28333.1 SIS28333.1 yybR_6 yybR_6 gabR_1 gabR_1 crp crp recQ_2 recQ_2 mecI mecI norG norG yjiR_1 yjiR_1 SIS29626.1 SIS29626.1 cysL_2 cysL_2 ntcA_2 ntcA_2 lrp_3 lrp_3 gcvA gcvA hxlR_3 hxlR_3 hxlR_2 hxlR_2 asnC_2 asnC_2 lacR lacR lutR_2 lutR_2 SIS36261.1 SIS36261.1 ydcR ydcR fur fur asnC_1 asnC_1 ruvB ruvB SIS41934.1 SIS41934.1 SIS37382.1 SIS37382.1 oxyR oxyR blaI_2 blaI_2 SIS49916.1 SIS49916.1 SIS51148.1 SIS51148.1 SIS59095.1 SIS59095.1 repE_2 repE_2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
yybR_3Transcriptional regulator, HxlR family. (130 aa)
ntcA_1cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases. (204 aa)
SIS31032.1Transcriptional regulator, PadR family. (109 aa)
gabR_2GntR family transcriptional regulator / MocR family aminotransferase. (481 aa)
SIS28333.1NUDIX domain-containing protein. (250 aa)
yybR_6Transcriptional regulator, HxlR family. (126 aa)
gabR_1GntR family transcriptional regulator / MocR family aminotransferase. (495 aa)
crpcAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases. (203 aa)
recQ_2ATP-dependent DNA helicase RecQ. (734 aa)
mecIPredicted transcriptional regulator. (121 aa)
norGGntR family transcriptional regulator / MocR family aminotransferase. (482 aa)
yjiR_1DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain. (476 aa)
SIS29626.1Fur family transcriptional regulator, ferric uptake regulator; Belongs to the Fur family. (143 aa)
cysL_2DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (292 aa)
ntcA_2CRP/FNR family transcriptional regulator, anaerobic regulatory protein. (207 aa)
lrp_3Transcriptional regulator, AsnC family. (153 aa)
gcvADNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (306 aa)
hxlR_3Transcriptional regulator, HxlR family. (135 aa)
hxlR_2Transcriptional regulator, HxlR family. (135 aa)
asnC_2Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA. (156 aa)
lacRTranscriptional regulator, DeoR family. (254 aa)
lutR_2DNA-binding transcriptional regulator, FadR family. (218 aa)
SIS36261.18-oxo-dGTP diphosphatase. (225 aa)
ydcRTranscriptional regulator, GntR family. (471 aa)
furFur family transcriptional regulator, ferric uptake regulator; Belongs to the Fur family. (157 aa)
asnC_1Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA. (156 aa)
ruvBHolliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (340 aa)
SIS41934.1Transcriptional regulator PadR-like family protein. (107 aa)
SIS37382.1Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains. (316 aa)
oxyRLysR family transcriptional regulator, hydrogen peroxide-inducible genes activator; Belongs to the LysR transcriptional regulatory family. (316 aa)
blaI_2Predicted transcriptional regulator. (123 aa)
SIS49916.1DNA-binding transcriptional regulator, MarR family. (225 aa)
SIS51148.1ADP-ribose pyrophosphatase YjhB, NUDIX family. (262 aa)
SIS59095.1Transcriptional regulator. (205 aa)
repE_2Initiator Replication protein. (309 aa)
Your Current Organism:
Chryseobacterium shigense
NCBI taxonomy Id: 297244
Other names: C. shigense, Chryseobacterium shigense Shimomura et al. 2005 emend. Montero-Calasanz et al. 2014, Chryseobacterium sp. 1107B-08, Chryseobacterium sp. 628-2-08, Chryseobacterium sp. 664-09, Chryseobacterium sp. 972B-08, DSM 17126, NCIMB 14047, strain GUM-Kaji
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