(5 nodes) Mixed, incl. SNF5/SMARCB1/INI1, and Snf2, ATP coupling domain network (Gossypium raimondii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D2RJA9	SWIB domain-containing protein. (540 aa)
	A0A0D2RMR6	Uncharacterized protein. (2586 aa)
	A0A0D2SYN7	Uncharacterized protein. (329 aa)
	A0A0D2TMJ0	Uncharacterized protein. (330 aa)
	A0A0D2U6P4	Uncharacterized protein. (566 aa)

Your Current Organism:

Gossypium raimondii

NCBI taxonomy Id: 29730
Other names: G. raimondii, Gossypium raimondii Ulbr.

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D2RJA9	A0A0D2RMR6	SWIB domain-containing protein.	Uncharacterized protein.	0.889
A0A0D2RJA9	A0A0D2SYN7	SWIB domain-containing protein.	Uncharacterized protein.	0.961
A0A0D2RJA9	A0A0D2TMJ0	SWIB domain-containing protein.	Uncharacterized protein.	0.902
A0A0D2RJA9	A0A0D2U6P4	SWIB domain-containing protein.	Uncharacterized protein.	0.863
A0A0D2RMR6	A0A0D2RJA9	Uncharacterized protein.	SWIB domain-containing protein.	0.889
A0A0D2RMR6	A0A0D2SYN7	Uncharacterized protein.	Uncharacterized protein.	0.919
A0A0D2RMR6	A0A0D2TMJ0	Uncharacterized protein.	Uncharacterized protein.	0.933
A0A0D2RMR6	A0A0D2U6P4	Uncharacterized protein.	Uncharacterized protein.	0.858
A0A0D2SYN7	A0A0D2RJA9	Uncharacterized protein.	SWIB domain-containing protein.	0.961
A0A0D2SYN7	A0A0D2RMR6	Uncharacterized protein.	Uncharacterized protein.	0.919
A0A0D2SYN7	A0A0D2TMJ0	Uncharacterized protein.	Uncharacterized protein.	0.926
A0A0D2SYN7	A0A0D2U6P4	Uncharacterized protein.	Uncharacterized protein.	0.940
A0A0D2TMJ0	A0A0D2RJA9	Uncharacterized protein.	SWIB domain-containing protein.	0.902
A0A0D2TMJ0	A0A0D2RMR6	Uncharacterized protein.	Uncharacterized protein.	0.933
A0A0D2TMJ0	A0A0D2SYN7	Uncharacterized protein.	Uncharacterized protein.	0.926
A0A0D2TMJ0	A0A0D2U6P4	Uncharacterized protein.	Uncharacterized protein.	0.885
A0A0D2U6P4	A0A0D2RJA9	Uncharacterized protein.	SWIB domain-containing protein.	0.863
A0A0D2U6P4	A0A0D2RMR6	Uncharacterized protein.	Uncharacterized protein.	0.858
A0A0D2U6P4	A0A0D2SYN7	Uncharacterized protein.	Uncharacterized protein.	0.940
A0A0D2U6P4	A0A0D2TMJ0	Uncharacterized protein.	Uncharacterized protein.	0.885