8 items (Gossypium raimondii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D2MMQ1	ThiF domain-containing protein. (323 aa)
	A0A0D2MRH6	UBIQUITIN_CONJUGAT_2 domain-containing protein. (134 aa)
	A0A0D2P996	Rad60-SLD domain-containing protein. (113 aa)
	A0A0D2PN36	SUMO-activating enzyme subunit; Belongs to the ubiquitin-activating E1 family. (651 aa)
	A0A0D2PZ71	SUMO-activating enzyme subunit; Belongs to the ubiquitin-activating E1 family. (648 aa)
	A0A0D2RJ45	ThiF domain-containing protein. (323 aa)
	A0A0D2TBM6	Ubiquitin-like domain-containing protein. (160 aa)
	A0A0D2UPI2	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (135 aa)

Your Current Organism:

Gossypium raimondii

NCBI taxonomy Id: 29730
Other names: G. raimondii, Gossypium raimondii Ulbr.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D2MMQ1	A0A0D2MRH6	ThiF domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.951
A0A0D2MMQ1	A0A0D2P996	ThiF domain-containing protein.	Rad60-SLD domain-containing protein.	0.906
A0A0D2MMQ1	A0A0D2PN36	ThiF domain-containing protein.	SUMO-activating enzyme subunit; Belongs to the ubiquitin-activating E1 family.	0.980
A0A0D2MMQ1	A0A0D2PZ71	ThiF domain-containing protein.	SUMO-activating enzyme subunit; Belongs to the ubiquitin-activating E1 family.	0.980
A0A0D2MMQ1	A0A0D2RJ45	ThiF domain-containing protein.	ThiF domain-containing protein.	0.900
A0A0D2MMQ1	A0A0D2TBM6	ThiF domain-containing protein.	Ubiquitin-like domain-containing protein.	0.906
A0A0D2MMQ1	A0A0D2UPI2	ThiF domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.951
A0A0D2MRH6	A0A0D2MMQ1	UBIQUITIN_CONJUGAT_2 domain-containing protein.	ThiF domain-containing protein.	0.951
A0A0D2MRH6	A0A0D2P996	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Rad60-SLD domain-containing protein.	0.757
A0A0D2MRH6	A0A0D2PN36	UBIQUITIN_CONJUGAT_2 domain-containing protein.	SUMO-activating enzyme subunit; Belongs to the ubiquitin-activating E1 family.	0.947
A0A0D2MRH6	A0A0D2PZ71	UBIQUITIN_CONJUGAT_2 domain-containing protein.	SUMO-activating enzyme subunit; Belongs to the ubiquitin-activating E1 family.	0.947
A0A0D2MRH6	A0A0D2RJ45	UBIQUITIN_CONJUGAT_2 domain-containing protein.	ThiF domain-containing protein.	0.951
A0A0D2MRH6	A0A0D2TBM6	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-like domain-containing protein.	0.757
A0A0D2P996	A0A0D2MMQ1	Rad60-SLD domain-containing protein.	ThiF domain-containing protein.	0.906
A0A0D2P996	A0A0D2MRH6	Rad60-SLD domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.757
A0A0D2P996	A0A0D2PN36	Rad60-SLD domain-containing protein.	SUMO-activating enzyme subunit; Belongs to the ubiquitin-activating E1 family.	0.882
A0A0D2P996	A0A0D2PZ71	Rad60-SLD domain-containing protein.	SUMO-activating enzyme subunit; Belongs to the ubiquitin-activating E1 family.	0.882
A0A0D2P996	A0A0D2RJ45	Rad60-SLD domain-containing protein.	ThiF domain-containing protein.	0.906
A0A0D2P996	A0A0D2UPI2	Rad60-SLD domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.757
A0A0D2PN36	A0A0D2MMQ1	SUMO-activating enzyme subunit; Belongs to the ubiquitin-activating E1 family.	ThiF domain-containing protein.	0.980