(39 nodes) Mixed, incl. Fanconi Anemia Pathway, and Nuclear transport factor 2 network (Gossypium raimondii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BS1	BIG SEEDS 1. (345 aa)
	A0A0D2N0P6	ERCC4 domain-containing protein. (968 aa)
	A0A0D2NBI5	53EXOc domain-containing protein. (440 aa)
	A0A0D2NDZ1	NTF2 domain-containing protein. (122 aa)
	A0A0D2NPP1	NTF2 domain-containing protein. (122 aa)
	BS3	BIG SEEDS 3. (341 aa)
	A0A0D2PPJ1	AA_TRNA_LIGASE_II domain-containing protein. (585 aa)
	A0A0D2Q0A2	Uncharacterized protein. (297 aa)
	A0A0D2Q2E2	Uncharacterized protein. (1477 aa)
	A0A0D2Q309	Uncharacterized protein. (492 aa)
	A0A0D2Q9N2	Uncharacterized protein. (667 aa)
	A0A0D2QT32	GIY-YIG domain-containing protein. (170 aa)
	A0A0D2QTP0	Uncharacterized protein. (627 aa)
	A0A0D2R2R5	POLAc domain-containing protein. (1136 aa)
	A0A0D2R5F5	tRNA-synt_2 domain-containing protein. (177 aa)
	A0A0D2RBU6	Uncharacterized protein. (646 aa)
	A0A0D2RDZ6	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. (951 aa)
	A0A0D2RFZ3	Uncharacterized protein. (292 aa)
	A0A0D2RHI2	Uncharacterized protein. (559 aa)
	A0A0D2RN13	LOB domain-containing protein. (223 aa)
	A0A0D2RXX3	Uncharacterized protein. (194 aa)
	A0A0D2RYS1	Uncharacterized protein. (1410 aa)
	A0A0D2S2H0	PPIase cyclophilin-type domain-containing protein. (343 aa)
	A0A0D2S8J0	Uncharacterized protein. (123 aa)
	A0A0D2SF73	Uncharacterized protein. (660 aa)
	A0A0D2SLG5	Uncharacterized protein. (547 aa)
	A0A0D2SP98	Uncharacterized protein. (133 aa)
	A0A0D2SPB7	Uncharacterized protein. (569 aa)
	A0A0D2T4R9	Uncharacterized protein. (548 aa)
	A0A0D2TT53	ERCC4 domain-containing protein. (632 aa)
	A0A0D2TVZ9	NTF2 domain-containing protein. (122 aa)
	A0A0D2UP30	NTF2 domain-containing protein. (161 aa)
	A0A0D2UUY9	Tify domain-containing protein. (366 aa)
	A0A0D2VDJ0	Uncharacterized protein. (1371 aa)
	A0A0D2VGY8	NTF2 domain-containing protein. (124 aa)
	A0A0D2VI18	Uncharacterized protein. (425 aa)
	A0A0D2VKW5	GIY-YIG domain-containing protein. (193 aa)
	A0A0D2VTP7	Structure-specific endonuclease subunit SLX1 homolog; Catalytic subunit of a heterodimeric structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA; Belongs to the SLX1 family. (498 aa)
	A0A0D2W9Z8	Uncharacterized protein. (86 aa)

Your Current Organism:

Gossypium raimondii

NCBI taxonomy Id: 29730
Other names: G. raimondii, Gossypium raimondii Ulbr.

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0D2N0P6	A0A0D2NBI5	A0A0D2N0P6	A0A0D2NBI5	ERCC4 domain-containing protein.	53EXOc domain-containing protein.	0.571
A0A0D2N0P6	A0A0D2NDZ1	A0A0D2N0P6	A0A0D2NDZ1	ERCC4 domain-containing protein.	NTF2 domain-containing protein.	0.589
A0A0D2N0P6	A0A0D2NPP1	A0A0D2N0P6	A0A0D2NPP1	ERCC4 domain-containing protein.	NTF2 domain-containing protein.	0.589
A0A0D2N0P6	A0A0D2PPJ1	A0A0D2N0P6	A0A0D2PPJ1	ERCC4 domain-containing protein.	AA_TRNA_LIGASE_II domain-containing protein.	0.681
A0A0D2N0P6	A0A0D2Q0A2	A0A0D2N0P6	A0A0D2Q0A2	ERCC4 domain-containing protein.	Uncharacterized protein.	0.506
A0A0D2N0P6	A0A0D2Q2E2	A0A0D2N0P6	A0A0D2Q2E2	ERCC4 domain-containing protein.	Uncharacterized protein.	0.624
A0A0D2N0P6	A0A0D2Q309	A0A0D2N0P6	A0A0D2Q309	ERCC4 domain-containing protein.	Uncharacterized protein.	0.681
A0A0D2N0P6	A0A0D2Q9N2	A0A0D2N0P6	A0A0D2Q9N2	ERCC4 domain-containing protein.	Uncharacterized protein.	0.589
A0A0D2N0P6	A0A0D2QT32	A0A0D2N0P6	A0A0D2QT32	ERCC4 domain-containing protein.	GIY-YIG domain-containing protein.	0.506
A0A0D2N0P6	A0A0D2QTP0	A0A0D2N0P6	A0A0D2QTP0	ERCC4 domain-containing protein.	Uncharacterized protein.	0.681
A0A0D2N0P6	A0A0D2R2R5	A0A0D2N0P6	A0A0D2R2R5	ERCC4 domain-containing protein.	POLAc domain-containing protein.	0.571
A0A0D2N0P6	A0A0D2R5F5	A0A0D2N0P6	A0A0D2R5F5	ERCC4 domain-containing protein.	tRNA-synt_2 domain-containing protein.	0.681
A0A0D2N0P6	A0A0D2RBU6	A0A0D2N0P6	A0A0D2RBU6	ERCC4 domain-containing protein.	Uncharacterized protein.	0.588
A0A0D2N0P6	A0A0D2RDZ6	A0A0D2N0P6	A0A0D2RDZ6	ERCC4 domain-containing protein.	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.	0.753
A0A0D2N0P6	A0A0D2RFZ3	A0A0D2N0P6	A0A0D2RFZ3	ERCC4 domain-containing protein.	Uncharacterized protein.	0.956
A0A0D2N0P6	A0A0D2RHI2	A0A0D2N0P6	A0A0D2RHI2	ERCC4 domain-containing protein.	Uncharacterized protein.	0.588
A0A0D2N0P6	A0A0D2RN13	A0A0D2N0P6	A0A0D2RN13	ERCC4 domain-containing protein.	LOB domain-containing protein.	0.506
A0A0D2N0P6	A0A0D2RXX3	A0A0D2N0P6	A0A0D2RXX3	ERCC4 domain-containing protein.	Uncharacterized protein.	0.926
A0A0D2N0P6	A0A0D2RYS1	A0A0D2N0P6	A0A0D2RYS1	ERCC4 domain-containing protein.	Uncharacterized protein.	0.760
A0A0D2N0P6	A0A0D2S8J0	A0A0D2N0P6	A0A0D2S8J0	ERCC4 domain-containing protein.	Uncharacterized protein.	0.506