(7 nodes) Mixed, incl. Restriction endonuclease type II-like, and Replication fork reversal network (Gossypium raimondii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D2N0P6	ERCC4 domain-containing protein. (968 aa)
	A0A0D2Q2E2	Uncharacterized protein. (1477 aa)
	A0A0D2RFZ3	Uncharacterized protein. (292 aa)
	A0A0D2RYS1	Uncharacterized protein. (1410 aa)
	A0A0D2TT53	ERCC4 domain-containing protein. (632 aa)
	A0A0D2VDJ0	Uncharacterized protein. (1371 aa)
	A0A0D2VI18	Uncharacterized protein. (425 aa)

Your Current Organism:

Gossypium raimondii

NCBI taxonomy Id: 29730
Other names: G. raimondii, Gossypium raimondii Ulbr.

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D2N0P6	A0A0D2Q2E2	ERCC4 domain-containing protein.	Uncharacterized protein.	0.624
A0A0D2N0P6	A0A0D2RFZ3	ERCC4 domain-containing protein.	Uncharacterized protein.	0.956
A0A0D2N0P6	A0A0D2RYS1	ERCC4 domain-containing protein.	Uncharacterized protein.	0.760
A0A0D2N0P6	A0A0D2TT53	ERCC4 domain-containing protein.	ERCC4 domain-containing protein.	0.943
A0A0D2N0P6	A0A0D2VDJ0	ERCC4 domain-containing protein.	Uncharacterized protein.	0.839
A0A0D2N0P6	A0A0D2VI18	ERCC4 domain-containing protein.	Uncharacterized protein.	0.979
A0A0D2Q2E2	A0A0D2N0P6	Uncharacterized protein.	ERCC4 domain-containing protein.	0.624
A0A0D2Q2E2	A0A0D2RFZ3	Uncharacterized protein.	Uncharacterized protein.	0.985
A0A0D2Q2E2	A0A0D2RYS1	Uncharacterized protein.	Uncharacterized protein.	0.993
A0A0D2Q2E2	A0A0D2TT53	Uncharacterized protein.	ERCC4 domain-containing protein.	0.755
A0A0D2Q2E2	A0A0D2VDJ0	Uncharacterized protein.	Uncharacterized protein.	0.701
A0A0D2Q2E2	A0A0D2VI18	Uncharacterized protein.	Uncharacterized protein.	0.787
A0A0D2RFZ3	A0A0D2N0P6	Uncharacterized protein.	ERCC4 domain-containing protein.	0.956
A0A0D2RFZ3	A0A0D2Q2E2	Uncharacterized protein.	Uncharacterized protein.	0.985
A0A0D2RFZ3	A0A0D2RYS1	Uncharacterized protein.	Uncharacterized protein.	0.993
A0A0D2RFZ3	A0A0D2TT53	Uncharacterized protein.	ERCC4 domain-containing protein.	0.953
A0A0D2RFZ3	A0A0D2VDJ0	Uncharacterized protein.	Uncharacterized protein.	0.984
A0A0D2RFZ3	A0A0D2VI18	Uncharacterized protein.	Uncharacterized protein.	0.990
A0A0D2RYS1	A0A0D2N0P6	Uncharacterized protein.	ERCC4 domain-containing protein.	0.760
A0A0D2RYS1	A0A0D2Q2E2	Uncharacterized protein.	Uncharacterized protein.	0.993