51 items (Gossypium raimondii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D2PVV3	BHLH domain-containing protein. (431 aa)
	A0A0D2PXP5	Uncharacterized protein. (341 aa)
	A0A0D2Q1L6	Uncharacterized protein. (1054 aa)
	A0A0D2Q7G9	Elf4 domain-containing protein. (178 aa)
	A0A0D2Q8H4	PCI domain-containing protein. (439 aa)
	A0A0D2QAF9	F-box domain-containing protein. (373 aa)
	A0A0D2QC96	PCI domain-containing protein. (397 aa)
	A0A0D2QI30	Uncharacterized protein. (312 aa)
	A0A0D2QLS2	Uncharacterized protein. (417 aa)
	A0A0D2QP04	PCI domain-containing protein. (260 aa)
	A0A0D2QPZ7	PCI domain-containing protein. (439 aa)
	A0A0D2QQZ7	BHLH domain-containing protein. (421 aa)
	A0A0D2QUC0	F-box domain-containing protein. (329 aa)
	A0A0D2QXR7	PCI domain-containing protein. (244 aa)
	A0A0D2QV57	PCI domain-containing protein. (197 aa)
	A0A0D2R6Z2	UBIQUITIN_CONJUGAT_2 domain-containing protein. (175 aa)
	A0A0D2RAV1	Elf4 domain-containing protein. (112 aa)
	A0A0D2REX5	Uncharacterized protein. (473 aa)
	A0A0D2RF76	Uncharacterized protein. (675 aa)
	A0A0D2RTV5	CPSF_A domain-containing protein. (1088 aa)
	A0A0D2RU84	Elf4 domain-containing protein. (105 aa)
	A0A0D2S050	PCI domain-containing protein. (424 aa)
	A0A0D2S2H1	Uncharacterized protein. (483 aa)
	A0A0D2SDF6	Uncharacterized protein. (503 aa)
	A0A0D2SEZ3	Uncharacterized protein. (723 aa)
	A0A0D2SKF6	Uncharacterized protein. (451 aa)
	A0A0D2SRU3	PCI domain-containing protein. (424 aa)
	A0A0D2SUG9	Uncharacterized protein. (924 aa)
	A0A0D2SYP0	PCI domain-containing protein. (278 aa)
	A0A0D2T0I2	F-box domain-containing protein. (327 aa)
	A0A0D2THD8	Uncharacterized protein. (450 aa)
	A0A0D2TNL4	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. (1123 aa)
	A0A0D2TP93	Uncharacterized protein. (529 aa)
	A0A0D2TW55	PCI domain-containing protein. (400 aa)
	A0A0D2UD51	Uncharacterized protein. (480 aa)
	A0A0D2UNN6	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. (1127 aa)
	A0A0D2UVJ9	Uncharacterized protein. (1196 aa)
	A0A0D2UZ10	Elf4 domain-containing protein. (108 aa)
	A0A0D2V9E4	Uncharacterized protein. (101 aa)
	A0A0D2VC87	Uncharacterized protein. (845 aa)
	A0A0D2VCE6	Uncharacterized protein. (419 aa)
	A0A0D2VKC0	PCI domain-containing protein. (388 aa)
	A0A0D2VPZ7	SRR1 domain-containing protein. (287 aa)
	A0A0D2W7X4	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. (1122 aa)
	A0A0D2N4I9	BZIP domain-containing protein. (169 aa)
	A0A0D2NBX2	Serine/threonine-protein phosphatase. (447 aa)
	A0A0D2NC65	SWIM-type domain-containing protein. (865 aa)
	A0A0D2NCF3	Uncharacterized protein. (834 aa)
	A0A0D2P6X7	Uncharacterized protein. (985 aa)
	A0A0D2PAD6	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. (1123 aa)
	A0A0D2PR38	PCI domain-containing protein. (397 aa)

Your Current Organism:

Gossypium raimondii

NCBI taxonomy Id: 29730
Other names: G. raimondii, Gossypium raimondii Ulbr.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D2N4I9	A0A0D2NC65	BZIP domain-containing protein.	SWIM-type domain-containing protein.	0.760
A0A0D2N4I9	A0A0D2P6X7	BZIP domain-containing protein.	Uncharacterized protein.	0.938
A0A0D2N4I9	A0A0D2PAD6	BZIP domain-containing protein.	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	0.462
A0A0D2N4I9	A0A0D2PVV3	BZIP domain-containing protein.	BHLH domain-containing protein.	0.440
A0A0D2N4I9	A0A0D2Q1L6	BZIP domain-containing protein.	Uncharacterized protein.	0.938
A0A0D2N4I9	A0A0D2QQZ7	BZIP domain-containing protein.	BHLH domain-containing protein.	0.440
A0A0D2N4I9	A0A0D2R6Z2	BZIP domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.532
A0A0D2N4I9	A0A0D2RF76	BZIP domain-containing protein.	Uncharacterized protein.	0.994
A0A0D2N4I9	A0A0D2RTV5	BZIP domain-containing protein.	CPSF_A domain-containing protein.	0.510
A0A0D2N4I9	A0A0D2SEZ3	BZIP domain-containing protein.	Uncharacterized protein.	0.994
A0A0D2N4I9	A0A0D2SUG9	BZIP domain-containing protein.	Uncharacterized protein.	0.737
A0A0D2N4I9	A0A0D2TNL4	BZIP domain-containing protein.	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	0.785
A0A0D2N4I9	A0A0D2TP93	BZIP domain-containing protein.	Uncharacterized protein.	0.671
A0A0D2N4I9	A0A0D2UNN6	BZIP domain-containing protein.	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	0.525
A0A0D2N4I9	A0A0D2UVJ9	BZIP domain-containing protein.	Uncharacterized protein.	0.548
A0A0D2N4I9	A0A0D2W7X4	BZIP domain-containing protein.	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	0.785
A0A0D2NC65	A0A0D2N4I9	SWIM-type domain-containing protein.	BZIP domain-containing protein.	0.760
A0A0D2NC65	A0A0D2RF76	SWIM-type domain-containing protein.	Uncharacterized protein.	0.439
A0A0D2NC65	A0A0D2SEZ3	SWIM-type domain-containing protein.	Uncharacterized protein.	0.439
A0A0D2NC65	A0A0D2TNL4	SWIM-type domain-containing protein.	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	0.532