39 items (Gossypium raimondii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D2R0X7	Uncharacterized protein. (586 aa)
	ABH1	MIF4G domain-containing protein. (864 aa)
	A0A0D2VF67	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (220 aa)
	A0A0D2V9E4	Uncharacterized protein. (101 aa)
	A0A0D2UEX6	Fibronectin type-III domain-containing protein. (717 aa)
	A0A0D2UD51	Uncharacterized protein. (480 aa)
	A0A0D2UA17	Uncharacterized protein. (147 aa)
	A0A0D2TD03	Uncharacterized protein. (357 aa)
	A0A0D2T8R0	WD_REPEATS_REGION domain-containing protein. (346 aa)
	A0A0D2T5D4	HTH myb-type domain-containing protein. (739 aa)
	A0A0D2T4T8	Peptidase S59 domain-containing protein. (1062 aa)
	A0A0D2T0I2	F-box domain-containing protein. (327 aa)
	A0A0D2SZS7	HTH myb-type domain-containing protein. (737 aa)
	A0A0D2SXA1	Uncharacterized protein. (448 aa)
	A0A0D2SKF6	Uncharacterized protein. (451 aa)
	A0A0D2SEZ3	Uncharacterized protein. (723 aa)
	A0A0D2SB68	Photolyase/cryptochrome alpha/beta domain-containing protein. (637 aa)
	A0A0D2S9H3	Photolyase/cryptochrome alpha/beta domain-containing protein. (655 aa)
	A0A0D2S5F1	Peptidase S59 domain-containing protein. (1144 aa)
	A0A0D2S556	Uncharacterized protein. (91 aa)
	A0A0D2S2H1	Uncharacterized protein. (483 aa)
	A0A0D2RW67	BHLH domain-containing protein. (375 aa)
	A0A0D2RVR8	BHLH domain-containing protein. (426 aa)
	A0A0D2RRU5	Protein kinase domain-containing protein. (690 aa)
	A0A0D2RP32	Uncharacterized protein. (586 aa)
	A0A0D2RIF1	Peptidase S59 domain-containing protein. (1021 aa)
	A0A0D2RF76	Uncharacterized protein. (675 aa)
	A0A0D2RE42	WD_REPEATS_REGION domain-containing protein. (346 aa)
	A0A0D2QUV7	Uncharacterized protein. (585 aa)
	A0A0D2QUC0	F-box domain-containing protein. (329 aa)
	A0A0D2QQW9	HTH myb-type domain-containing protein. (729 aa)
	A0A0D2Q0K8	Uncharacterized protein. (2223 aa)
	A0A0D2PNA7	U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; Belongs to the methyltransferase superfamily. METTL16/RlmF family. (500 aa)
	A0A0D2P574	Protein kinase domain-containing protein. (704 aa)
	A0A0D2NLS0	Protein kinase domain-containing protein. (135 aa)
	A0A0D2MXK0	Peptidase S59 domain-containing protein. (995 aa)
	A0A0D2MT34	BHLH domain-containing protein. (339 aa)
	A0A0D2MJ78	Uncharacterized protein. (560 aa)
	A0A0D2MEP4	BHLH domain-containing protein. (346 aa)

Your Current Organism:

Gossypium raimondii

NCBI taxonomy Id: 29730
Other names: G. raimondii, Gossypium raimondii Ulbr.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0D2MJ78	A0A0D2T4T8	A0A0D2MJ78	A0A0D2T4T8	Uncharacterized protein.	Peptidase S59 domain-containing protein.	0.438
A0A0D2MXK0	ABH1	A0A0D2MXK0	A0A0D2W9D3	Peptidase S59 domain-containing protein.	MIF4G domain-containing protein.	0.656
A0A0D2QQW9	A0A0D2RE42	A0A0D2QQW9	A0A0D2RE42	HTH myb-type domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.412
A0A0D2QQW9	A0A0D2SZS7	A0A0D2QQW9	A0A0D2SZS7	HTH myb-type domain-containing protein.	HTH myb-type domain-containing protein.	0.901
A0A0D2QQW9	A0A0D2T5D4	A0A0D2QQW9	A0A0D2T5D4	HTH myb-type domain-containing protein.	HTH myb-type domain-containing protein.	0.901
A0A0D2QQW9	A0A0D2T8R0	A0A0D2QQW9	A0A0D2T8R0	HTH myb-type domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.412
A0A0D2QUC0	ABH1	A0A0D2QUC0	A0A0D2W9D3	F-box domain-containing protein.	MIF4G domain-containing protein.	0.918
A0A0D2RE42	A0A0D2QQW9	A0A0D2RE42	A0A0D2QQW9	WD_REPEATS_REGION domain-containing protein.	HTH myb-type domain-containing protein.	0.412
A0A0D2RE42	A0A0D2SZS7	A0A0D2RE42	A0A0D2SZS7	WD_REPEATS_REGION domain-containing protein.	HTH myb-type domain-containing protein.	0.412
A0A0D2RE42	A0A0D2T5D4	A0A0D2RE42	A0A0D2T5D4	WD_REPEATS_REGION domain-containing protein.	HTH myb-type domain-containing protein.	0.412
A0A0D2RF76	A0A0D2S9H3	A0A0D2RF76	A0A0D2S9H3	Uncharacterized protein.	Photolyase/cryptochrome alpha/beta domain-containing protein.	0.909
A0A0D2RF76	A0A0D2SB68	A0A0D2RF76	A0A0D2SB68	Uncharacterized protein.	Photolyase/cryptochrome alpha/beta domain-containing protein.	0.909
A0A0D2RF76	A0A0D2SEZ3	A0A0D2RF76	A0A0D2SEZ3	Uncharacterized protein.	Uncharacterized protein.	0.901
A0A0D2RIF1	ABH1	A0A0D2RIF1	A0A0D2W9D3	Peptidase S59 domain-containing protein.	MIF4G domain-containing protein.	0.656
A0A0D2S5F1	ABH1	A0A0D2S5F1	A0A0D2W9D3	Peptidase S59 domain-containing protein.	MIF4G domain-containing protein.	0.656
A0A0D2S9H3	A0A0D2RF76	A0A0D2S9H3	A0A0D2RF76	Photolyase/cryptochrome alpha/beta domain-containing protein.	Uncharacterized protein.	0.909
A0A0D2S9H3	A0A0D2SEZ3	A0A0D2S9H3	A0A0D2SEZ3	Photolyase/cryptochrome alpha/beta domain-containing protein.	Uncharacterized protein.	0.909
A0A0D2SB68	A0A0D2RF76	A0A0D2SB68	A0A0D2RF76	Photolyase/cryptochrome alpha/beta domain-containing protein.	Uncharacterized protein.	0.909
A0A0D2SB68	A0A0D2SEZ3	A0A0D2SB68	A0A0D2SEZ3	Photolyase/cryptochrome alpha/beta domain-containing protein.	Uncharacterized protein.	0.909
A0A0D2SEZ3	A0A0D2RF76	A0A0D2SEZ3	A0A0D2RF76	Uncharacterized protein.	Uncharacterized protein.	0.901