(14 nodes) ARID DNA-binding domain superfamily network (Gossypium raimondii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D2TMJ0	Uncharacterized protein. (330 aa)
	A0A0D2LTH1	ARID domain-containing protein. (746 aa)
	A0A0D2M9I7	Uncharacterized protein. (425 aa)
	A0A0D2N1L8	Uncharacterized protein. (1868 aa)
	A0A0D2NAD1	ARID domain-containing protein. (736 aa)
	A0A0D2PTC6	ARID domain-containing protein. (665 aa)
	A0A0D2Q8T2	ARID domain-containing protein. (745 aa)
	A0A0D2QKM9	Uncharacterized protein. (537 aa)
	A0A0D2R1R5	ARID domain-containing protein. (574 aa)
	A0A0D2R522	ARID domain-containing protein. (754 aa)
	A0A0D2S2Q4	Uncharacterized protein. (481 aa)
	A0A0D2SFZ3	Uncharacterized protein. (443 aa)
	A0A0D2T8R8	Uncharacterized protein. (452 aa)
	A0A0D2W688	Uncharacterized protein. (307 aa)

Your Current Organism:

Gossypium raimondii

NCBI taxonomy Id: 29730
Other names: G. raimondii, Gossypium raimondii Ulbr.

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D2M9I7	A0A0D2TMJ0	Uncharacterized protein.	Uncharacterized protein.	0.467
A0A0D2QKM9	A0A0D2W688	Uncharacterized protein.	Uncharacterized protein.	0.413
A0A0D2S2Q4	A0A0D2TMJ0	Uncharacterized protein.	Uncharacterized protein.	0.437
A0A0D2S2Q4	A0A0D2W688	Uncharacterized protein.	Uncharacterized protein.	0.496
A0A0D2SFZ3	A0A0D2T8R8	Uncharacterized protein.	Uncharacterized protein.	0.854
A0A0D2SFZ3	A0A0D2TMJ0	Uncharacterized protein.	Uncharacterized protein.	0.857
A0A0D2SFZ3	A0A0D2W688	Uncharacterized protein.	Uncharacterized protein.	0.857
A0A0D2T8R8	A0A0D2SFZ3	Uncharacterized protein.	Uncharacterized protein.	0.854
A0A0D2T8R8	A0A0D2TMJ0	Uncharacterized protein.	Uncharacterized protein.	0.857
A0A0D2T8R8	A0A0D2W688	Uncharacterized protein.	Uncharacterized protein.	0.857
A0A0D2TMJ0	A0A0D2M9I7	Uncharacterized protein.	Uncharacterized protein.	0.467
A0A0D2TMJ0	A0A0D2S2Q4	Uncharacterized protein.	Uncharacterized protein.	0.437
A0A0D2TMJ0	A0A0D2SFZ3	Uncharacterized protein.	Uncharacterized protein.	0.857
A0A0D2TMJ0	A0A0D2T8R8	Uncharacterized protein.	Uncharacterized protein.	0.857
A0A0D2TMJ0	A0A0D2W688	Uncharacterized protein.	Uncharacterized protein.	0.857
A0A0D2W688	A0A0D2QKM9	Uncharacterized protein.	Uncharacterized protein.	0.413
A0A0D2W688	A0A0D2S2Q4	Uncharacterized protein.	Uncharacterized protein.	0.496
A0A0D2W688	A0A0D2SFZ3	Uncharacterized protein.	Uncharacterized protein.	0.857
A0A0D2W688	A0A0D2T8R8	Uncharacterized protein.	Uncharacterized protein.	0.857
A0A0D2W688	A0A0D2TMJ0	Uncharacterized protein.	Uncharacterized protein.	0.857