36 items (Gossypium raimondii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D2S3B0	RanBD1 domain-containing protein. (304 aa)
	A0A0D2VSW8	Uncharacterized protein. (817 aa)
	A0A0D2UPI2	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (135 aa)
	A0A0D2UGE7	Uncharacterized protein. (1331 aa)
	A0A0D2UD93	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (160 aa)
	A0A0D2UC82	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (715 aa)
	A0A0D2U9G2	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family. (325 aa)
	A0A0D2TZ80	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (102 aa)
	A0A0D2TWF7	Uncharacterized protein. (1960 aa)
	A0A0D2TA73	RING-type domain-containing protein. (296 aa)
	A0A0D2MPQ8	RanBD1 domain-containing protein. (446 aa)
	A0A0D2T3Y5	Nuclear pore complex protein NUP35. (328 aa)
	A0A0D2SRF5	Uncharacterized protein. (429 aa)
	A0A0D2SQ30	Nuclear pore protein. (863 aa)
	A0A0D2SHF8	Uncharacterized protein. (801 aa)
	A0A0D2SD58	Uncharacterized protein. (886 aa)
	A0A0D2S156	Uncharacterized protein. (1357 aa)
	A0A0D2RZN9	WD_REPEATS_REGION domain-containing protein. (349 aa)
	A0A0D2RYR2	Uncharacterized protein. (1301 aa)
	A0A0D2RPN5	BIG2 domain-containing protein. (782 aa)
	A0A0D2RHJ5	Nuclear pore complex protein NUP35. (330 aa)
	A0A0D2R291	DUF5311 domain-containing protein. (1487 aa)
	A0A0D2QWF5	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (160 aa)
	A0A0D2QTI9	Nsp1_C domain-containing protein. (795 aa)
	A0A0D2QLH3	Uncharacterized protein. (741 aa)
	A0A0D2Q6M7	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (1107 aa)
	A0A0D2PZT0	Uncharacterized protein. (179 aa)
	A0A0D2PU93	Nup54 domain-containing protein. (425 aa)
	A0A0D2PTQ9	Uncharacterized protein. (1495 aa)
	A0A0D2PLL5	Uncharacterized protein. (1875 aa)
	A0A0D2PJ54	WD_REPEATS_REGION domain-containing protein. (433 aa)
	A0A0D2PH58	Uncharacterized protein. (802 aa)
	A0A0D2P0C7	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (163 aa)
	GATC	Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatC family. (142 aa)
	A0A0D2MRH6	UBIQUITIN_CONJUGAT_2 domain-containing protein. (134 aa)
	A0A0D2M9G9	TPR_MLP1_2 domain-containing protein. (2086 aa)

Your Current Organism:

Gossypium raimondii

NCBI taxonomy Id: 29730
Other names: G. raimondii, Gossypium raimondii Ulbr.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0D2M9G9	A0A0D2MPQ8	A0A0D2M9G9	A0A0D2MPQ8	TPR_MLP1_2 domain-containing protein.	RanBD1 domain-containing protein.	0.862
A0A0D2M9G9	A0A0D2MRH6	A0A0D2M9G9	A0A0D2MRH6	TPR_MLP1_2 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.628
A0A0D2M9G9	A0A0D2P0C7	A0A0D2M9G9	A0A0D2P0C7	TPR_MLP1_2 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.628
A0A0D2M9G9	A0A0D2PJ54	A0A0D2M9G9	A0A0D2PJ54	TPR_MLP1_2 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.910
A0A0D2M9G9	A0A0D2PLL5	A0A0D2M9G9	A0A0D2PLL5	TPR_MLP1_2 domain-containing protein.	Uncharacterized protein.	0.957
A0A0D2M9G9	A0A0D2PTQ9	A0A0D2M9G9	A0A0D2PTQ9	TPR_MLP1_2 domain-containing protein.	Uncharacterized protein.	0.932
A0A0D2M9G9	A0A0D2PU93	A0A0D2M9G9	A0A0D2PU93	TPR_MLP1_2 domain-containing protein.	Nup54 domain-containing protein.	0.909
A0A0D2M9G9	A0A0D2PZT0	A0A0D2M9G9	A0A0D2PZT0	TPR_MLP1_2 domain-containing protein.	Uncharacterized protein.	0.857
A0A0D2M9G9	A0A0D2Q6M7	A0A0D2M9G9	A0A0D2Q6M7	TPR_MLP1_2 domain-containing protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.963
A0A0D2M9G9	A0A0D2QTI9	A0A0D2M9G9	A0A0D2QTI9	TPR_MLP1_2 domain-containing protein.	Nsp1_C domain-containing protein.	0.857
A0A0D2M9G9	A0A0D2QWF5	A0A0D2M9G9	A0A0D2QWF5	TPR_MLP1_2 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.628
A0A0D2M9G9	A0A0D2R291	A0A0D2M9G9	A0A0D2R291	TPR_MLP1_2 domain-containing protein.	DUF5311 domain-containing protein.	0.859
A0A0D2M9G9	A0A0D2RHJ5	A0A0D2M9G9	A0A0D2RHJ5	TPR_MLP1_2 domain-containing protein.	Nuclear pore complex protein NUP35.	0.821
A0A0D2M9G9	A0A0D2RPN5	A0A0D2M9G9	A0A0D2RPN5	TPR_MLP1_2 domain-containing protein.	BIG2 domain-containing protein.	0.775
A0A0D2M9G9	A0A0D2RZN9	A0A0D2M9G9	A0A0D2RZN9	TPR_MLP1_2 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.929
A0A0D2M9G9	A0A0D2S156	A0A0D2M9G9	A0A0D2S156	TPR_MLP1_2 domain-containing protein.	Uncharacterized protein.	0.963
A0A0D2M9G9	A0A0D2S3B0	A0A0D2M9G9	A0A0D2S3B0	TPR_MLP1_2 domain-containing protein.	RanBD1 domain-containing protein.	0.862
A0A0D2M9G9	A0A0D2SQ30	A0A0D2M9G9	A0A0D2SQ30	TPR_MLP1_2 domain-containing protein.	Nuclear pore protein.	0.963
A0A0D2M9G9	A0A0D2SRF5	A0A0D2M9G9	A0A0D2SRF5	TPR_MLP1_2 domain-containing protein.	Uncharacterized protein.	0.775
A0A0D2M9G9	A0A0D2T3Y5	A0A0D2M9G9	A0A0D2T3Y5	TPR_MLP1_2 domain-containing protein.	Nuclear pore complex protein NUP35.	0.821