61 items (Gossypium raimondii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D2SSB5	XPGN domain-containing protein. (76 aa)
	A0A0D2W6Y8	XPGN domain-containing protein. (68 aa)
	A0A0D2VHE0	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (629 aa)
	A0A0D2VH84	Uncharacterized protein. (116 aa)
	A0A0D2VG14	AAA domain-containing protein. (354 aa)
	A0A0D2VBQ9	XPGN domain-containing protein. (102 aa)
	A0A0D2V3C3	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (334 aa)
	FEN1-2	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (383 aa)
	A0A0D2UR74	DNA_pol3_gamma3 domain-containing protein. (1326 aa)
	A0A0D2UP44	Uncharacterized protein. (239 aa)
	A0A0D2UIG0	NAC domain-containing protein. (410 aa)
	A0A0D2U9G5	AAA domain-containing protein. (342 aa)
	A0A0D2U7B7	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (266 aa)
	A0A0D2TUX3	AAA domain-containing protein. (363 aa)
	A0A0D2TLL5	Uncharacterized protein. (164 aa)
	A0A0D2TH74	Replication factor C subunit 1. (852 aa)
	A0A0D2TG65	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2204 aa)
	A0A0D2TG48	CBFD_NFYB_HMF domain-containing protein. (167 aa)
	A0A0D2TDC9	NAC domain-containing protein. (452 aa)
	A0A0D2T4W1	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (856 aa)
	A0A0D2T1V9	AAA domain-containing protein. (1163 aa)
	A0A0D2SY88	AAA domain-containing protein. (1146 aa)
	A0A0D2ST69	XPGN domain-containing protein. (121 aa)
	A0A0D2SS78	XPGI domain-containing protein. (473 aa)
	A0A0D2SJY3	NAC domain-containing protein. (254 aa)
	A0A0D2SJE1	Uncharacterized protein. (122 aa)
	FEN1	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (414 aa)
	A0A0D2S9D6	NAC domain-containing protein. (319 aa)
	A0A0D2S130	NAC domain-containing protein. (371 aa)
	A0A0D2S066	Uncharacterized protein. (611 aa)
	A0A0D2RV31	Uncharacterized protein. (234 aa)
	A0A0D2RSP2	AAA domain-containing protein. (1171 aa)
	A0A0D2RML1	NAC domain-containing protein. (859 aa)
	A0A0D2RLE0	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (266 aa)
	A0A0D2RF05	Uncharacterized protein. (764 aa)
	A0A0D2RAU5	Uncharacterized protein. (711 aa)
	A0A0D2R6S1	Uncharacterized protein. (104 aa)
	A0A0D2R3M4	NAC domain-containing protein. (483 aa)
	A0A0D2R273	NAC domain-containing protein. (268 aa)
	A0A0D2R260	Uncharacterized protein. (1216 aa)
	A0A0D2QUM6	NAC domain-containing protein. (402 aa)
	A0A0D2QPM3	NAC domain-containing protein. (635 aa)
	A0A0D2QIB0	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (626 aa)
	A0A0D2Q8U4	Uncharacterized protein. (234 aa)
	A0A0D2Q0D1	NAC domain-containing protein. (279 aa)
	A0A0D2PTQ5	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (287 aa)
	A0A0D2PS23	XPGN domain-containing protein. (158 aa)
	A0A0D2PRV0	NAC domain-containing protein. (501 aa)
	A0A0D2PL93	NAC domain-containing protein. (444 aa)
	A0A0D2PGQ7	NAC domain-containing protein. (481 aa)
	A0A0D2PET7	AAA domain-containing protein. (354 aa)
	A0A0D2P312	Uncharacterized protein. (287 aa)
	A0A0D2NYQ0	Uncharacterized protein. (126 aa)
	A0A0D2NRX9	Uncharacterized protein. (652 aa)
	A0A0D2N6L3	NAC domain-containing protein. (450 aa)
	A0A0D2MPP1	AAA domain-containing protein. (332 aa)
	A0A0D2MME9	XPGN domain-containing protein. (122 aa)
	A0A0D2MB94	Uncharacterized protein. (124 aa)
	A0A0D2M8T5	Uncharacterized protein. (68 aa)
	A0A0D2M312	NAC domain-containing protein. (294 aa)
	A0A0D2LVF7	Uncharacterized protein. (1007 aa)

Your Current Organism:

Gossypium raimondii

NCBI taxonomy Id: 29730
Other names: G. raimondii, Gossypium raimondii Ulbr.

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0D2LVF7	A0A0D2M312	A0A0D2LVF7	A0A0D2M312	Uncharacterized protein.	NAC domain-containing protein.	0.482
A0A0D2LVF7	A0A0D2M8T5	A0A0D2LVF7	A0A0D2M8T5	Uncharacterized protein.	Uncharacterized protein.	0.648
A0A0D2LVF7	A0A0D2MB94	A0A0D2LVF7	A0A0D2MB94	Uncharacterized protein.	Uncharacterized protein.	0.648
A0A0D2LVF7	A0A0D2MME9	A0A0D2LVF7	A0A0D2MME9	Uncharacterized protein.	XPGN domain-containing protein.	0.648
A0A0D2LVF7	A0A0D2MPP1	A0A0D2LVF7	A0A0D2MPP1	Uncharacterized protein.	AAA domain-containing protein.	0.973
A0A0D2LVF7	A0A0D2N6L3	A0A0D2LVF7	A0A0D2N6L3	Uncharacterized protein.	NAC domain-containing protein.	0.482
A0A0D2LVF7	A0A0D2NRX9	A0A0D2LVF7	A0A0D2NRX9	Uncharacterized protein.	Uncharacterized protein.	0.938
A0A0D2LVF7	A0A0D2NYQ0	A0A0D2LVF7	A0A0D2NYQ0	Uncharacterized protein.	Uncharacterized protein.	0.648
A0A0D2LVF7	A0A0D2P312	A0A0D2LVF7	A0A0D2P312	Uncharacterized protein.	Uncharacterized protein.	0.482
A0A0D2LVF7	A0A0D2PET7	A0A0D2LVF7	A0A0D2PET7	Uncharacterized protein.	AAA domain-containing protein.	0.938
A0A0D2LVF7	A0A0D2PGQ7	A0A0D2LVF7	A0A0D2PGQ7	Uncharacterized protein.	NAC domain-containing protein.	0.482
A0A0D2LVF7	A0A0D2PL93	A0A0D2LVF7	A0A0D2PL93	Uncharacterized protein.	NAC domain-containing protein.	0.482
A0A0D2LVF7	A0A0D2PRV0	A0A0D2LVF7	A0A0D2PRV0	Uncharacterized protein.	NAC domain-containing protein.	0.482
A0A0D2LVF7	A0A0D2PS23	A0A0D2LVF7	A0A0D2PS23	Uncharacterized protein.	XPGN domain-containing protein.	0.648
A0A0D2LVF7	A0A0D2PTQ5	A0A0D2LVF7	A0A0D2PTQ5	Uncharacterized protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.874
A0A0D2LVF7	A0A0D2Q0D1	A0A0D2LVF7	A0A0D2Q0D1	Uncharacterized protein.	NAC domain-containing protein.	0.482
A0A0D2LVF7	A0A0D2Q8U4	A0A0D2LVF7	A0A0D2Q8U4	Uncharacterized protein.	Uncharacterized protein.	0.482
A0A0D2LVF7	A0A0D2QIB0	A0A0D2LVF7	A0A0D2QIB0	Uncharacterized protein.	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses.	0.482
A0A0D2LVF7	A0A0D2QPM3	A0A0D2LVF7	A0A0D2QPM3	Uncharacterized protein.	NAC domain-containing protein.	0.482
A0A0D2LVF7	A0A0D2QUM6	A0A0D2LVF7	A0A0D2QUM6	Uncharacterized protein.	NAC domain-containing protein.	0.482