52 items (Gossypium raimondii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D2Q0D1	NAC domain-containing protein. (279 aa)
	A0A0D2PS23	XPGN domain-containing protein. (158 aa)
	A0A0D2PRV0	NAC domain-containing protein. (501 aa)
	A0A0D2PL93	NAC domain-containing protein. (444 aa)
	A0A0D2PGQ7	NAC domain-containing protein. (481 aa)
	A0A0D2P3Y4	Protein kinase domain-containing protein. (316 aa)
	A0A0D2P312	Uncharacterized protein. (287 aa)
	A0A0D2NYQ0	Uncharacterized protein. (126 aa)
	A0A0D2NDX6	Uncharacterized protein. (452 aa)
	A0A0D2M312	NAC domain-containing protein. (294 aa)
	A0A0D2N6L3	NAC domain-containing protein. (450 aa)
	A0A0D2MME9	XPGN domain-containing protein. (122 aa)
	A0A0D2MB94	Uncharacterized protein. (124 aa)
	A0A0D2M8T5	Uncharacterized protein. (68 aa)
	A0A0D2W6Y8	XPGN domain-containing protein. (68 aa)
	A0A0D2VWW4	Uncharacterized protein. (1351 aa)
	A0A0D2VHE0	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (629 aa)
	A0A0D2VH84	Uncharacterized protein. (116 aa)
	A0A0D2VG53	DNA polymerase. (1097 aa)
	A0A0D2VBQ9	XPGN domain-containing protein. (102 aa)
	A0A0D2V4K0	Uncharacterized protein. (290 aa)
	A0A0D2V3U3	DNA_pol_E_B domain-containing protein. (149 aa)
	A0A0D2V3C3	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (334 aa)
	FEN1-2	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (383 aa)
	A0A0D2UP44	Uncharacterized protein. (239 aa)
	A0A0D2UIG0	NAC domain-containing protein. (410 aa)
	A0A0D2U9H4	DNA primase; Belongs to the eukaryotic-type primase small subunit family. (452 aa)
	A0A0D2U7B7	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (266 aa)
	A0A0D2TLL5	Uncharacterized protein. (164 aa)
	A0A0D2TDC9	NAC domain-containing protein. (452 aa)
	A0A0D2T4W1	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (856 aa)
	A0A0D2ST69	XPGN domain-containing protein. (121 aa)
	A0A0D2SSB5	XPGN domain-containing protein. (76 aa)
	A0A0D2SS78	XPGI domain-containing protein. (473 aa)
	A0A0D2SJY3	NAC domain-containing protein. (254 aa)
	A0A0D2SJE1	Uncharacterized protein. (122 aa)
	A0A0D2SHQ5	DNA polymerase. (1588 aa)
	FEN1	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (414 aa)
	A0A0D2SCN4	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (623 aa)
	A0A0D2S9D6	NAC domain-containing protein. (319 aa)
	A0A0D2S130	NAC domain-containing protein. (371 aa)
	A0A0D2S066	Uncharacterized protein. (611 aa)
	A0A0D2RV31	Uncharacterized protein. (234 aa)
	A0A0D2RML1	NAC domain-containing protein. (859 aa)
	A0A0D2RLE0	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (266 aa)
	A0A0D2R6S1	Uncharacterized protein. (104 aa)
	A0A0D2R3M4	NAC domain-containing protein. (483 aa)
	A0A0D2R273	NAC domain-containing protein. (268 aa)
	A0A0D2QUM6	NAC domain-containing protein. (402 aa)
	A0A0D2QPM3	NAC domain-containing protein. (635 aa)
	A0A0D2QIB0	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (626 aa)
	A0A0D2Q8U4	Uncharacterized protein. (234 aa)

Your Current Organism:

Gossypium raimondii

NCBI taxonomy Id: 29730
Other names: G. raimondii, Gossypium raimondii Ulbr.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0D2M312	A0A0D2NDX6	A0A0D2M312	A0A0D2NDX6	NAC domain-containing protein.	Uncharacterized protein.	0.645
A0A0D2M312	A0A0D2P3Y4	A0A0D2M312	A0A0D2P3Y4	NAC domain-containing protein.	Protein kinase domain-containing protein.	0.646
A0A0D2M312	A0A0D2RLE0	A0A0D2M312	A0A0D2RLE0	NAC domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.715
A0A0D2M312	A0A0D2SCN4	A0A0D2M312	A0A0D2SCN4	NAC domain-containing protein.	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis.	0.517
A0A0D2M312	A0A0D2SHQ5	A0A0D2M312	A0A0D2SHQ5	NAC domain-containing protein.	DNA polymerase.	0.648
A0A0D2M312	A0A0D2U7B7	A0A0D2M312	A0A0D2U7B7	NAC domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.715
A0A0D2M312	A0A0D2U9H4	A0A0D2M312	A0A0D2U9H4	NAC domain-containing protein.	DNA primase; Belongs to the eukaryotic-type primase small subunit family.	0.652
A0A0D2M312	A0A0D2V3C3	A0A0D2M312	A0A0D2V3C3	NAC domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.715
A0A0D2M312	A0A0D2V3U3	A0A0D2M312	A0A0D2V3U3	NAC domain-containing protein.	DNA_pol_E_B domain-containing protein.	0.462
A0A0D2M312	A0A0D2V4K0	A0A0D2M312	A0A0D2V4K0	NAC domain-containing protein.	Uncharacterized protein.	0.462
A0A0D2M312	A0A0D2VG53	A0A0D2M312	A0A0D2VG53	NAC domain-containing protein.	DNA polymerase.	0.640
A0A0D2M312	A0A0D2VWW4	A0A0D2M312	A0A0D2VWW4	NAC domain-containing protein.	Uncharacterized protein.	0.835
A0A0D2M8T5	A0A0D2NDX6	A0A0D2M8T5	A0A0D2NDX6	Uncharacterized protein.	Uncharacterized protein.	0.779
A0A0D2M8T5	A0A0D2P3Y4	A0A0D2M8T5	A0A0D2P3Y4	Uncharacterized protein.	Protein kinase domain-containing protein.	0.890
A0A0D2M8T5	A0A0D2RLE0	A0A0D2M8T5	A0A0D2RLE0	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.902
A0A0D2M8T5	A0A0D2SCN4	A0A0D2M8T5	A0A0D2SCN4	Uncharacterized protein.	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis.	0.734
A0A0D2M8T5	A0A0D2SHQ5	A0A0D2M8T5	A0A0D2SHQ5	Uncharacterized protein.	DNA polymerase.	0.845
A0A0D2M8T5	A0A0D2U7B7	A0A0D2M8T5	A0A0D2U7B7	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.902
A0A0D2M8T5	A0A0D2U9H4	A0A0D2M8T5	A0A0D2U9H4	Uncharacterized protein.	DNA primase; Belongs to the eukaryotic-type primase small subunit family.	0.844
A0A0D2M8T5	A0A0D2V3C3	A0A0D2M8T5	A0A0D2V3C3	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.902