11 items (Gossypium raimondii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D2UXY8	Uncharacterized protein. (238 aa)
	A0A0D2VES4	ThiF domain-containing protein. (163 aa)
	A0A0D2RLU1	NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric E1 enzyme. E1 activates RUB1/NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a RUB1-ECR1 thioester and free AMP. E1 finally transfers RUB1 to the catalytic cysteine of RCE1. Belongs to the ubiquitin-activating E1 family. ULA1 subfamily. (524 aa)
	A0A0D2RJ45	ThiF domain-containing protein. (323 aa)
	MOCS3	Adenylyltransferase and sulfurtransferase MOCS3; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Also essential during biosynthesis of the molybdenum cofactor. Acts by mediating the C-terminal thiocarboxylation of sulfur carriers URM1 and MOCS2A. Its N-terminus first activates URM1 and MOCS2A as acyl- adenylates (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to URM1 and MOCS2A to form thiocarboxylation (- COSH) of their C-terminus. The reaction probably involves hydrogen sulfide [...] (470 aa)
	A0A0D2PKB5	Uncharacterized protein. (116 aa)
	A0A0D2PBL5	ThiF domain-containing protein. (458 aa)
	A0A0D2NXK1	E2_bind domain-containing protein. (449 aa)
	A0A0D2MMQ1	ThiF domain-containing protein. (323 aa)
	A0A0D2T3Z0	ThiF domain-containing protein. (431 aa)
	A0A0D2TR54	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy. (711 aa)

Your Current Organism:

Gossypium raimondii

NCBI taxonomy Id: 29730
Other names: G. raimondii, Gossypium raimondii Ulbr.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D2MMQ1	A0A0D2NXK1	ThiF domain-containing protein.	E2_bind domain-containing protein.	0.464
A0A0D2MMQ1	A0A0D2PKB5	ThiF domain-containing protein.	Uncharacterized protein.	0.404
A0A0D2MMQ1	A0A0D2RJ45	ThiF domain-containing protein.	ThiF domain-containing protein.	0.900
A0A0D2MMQ1	A0A0D2T3Z0	ThiF domain-containing protein.	ThiF domain-containing protein.	0.404
A0A0D2NXK1	A0A0D2MMQ1	E2_bind domain-containing protein.	ThiF domain-containing protein.	0.464
A0A0D2NXK1	A0A0D2PKB5	E2_bind domain-containing protein.	Uncharacterized protein.	0.784
A0A0D2NXK1	A0A0D2RJ45	E2_bind domain-containing protein.	ThiF domain-containing protein.	0.464
A0A0D2NXK1	A0A0D2RLU1	E2_bind domain-containing protein.	NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric E1 enzyme. E1 activates RUB1/NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a RUB1-ECR1 thioester and free AMP. E1 finally transfers RUB1 to the catalytic cysteine of RCE1. Belongs to the ubiquitin-activating E1 family. ULA1 subfamily.	0.996
A0A0D2NXK1	A0A0D2T3Z0	E2_bind domain-containing protein.	ThiF domain-containing protein.	0.784
A0A0D2NXK1	A0A0D2TR54	E2_bind domain-containing protein.	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	0.757
A0A0D2PKB5	A0A0D2MMQ1	Uncharacterized protein.	ThiF domain-containing protein.	0.404
A0A0D2PKB5	A0A0D2NXK1	Uncharacterized protein.	E2_bind domain-containing protein.	0.784
A0A0D2PKB5	A0A0D2RJ45	Uncharacterized protein.	ThiF domain-containing protein.	0.404
A0A0D2PKB5	A0A0D2RLU1	Uncharacterized protein.	NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric E1 enzyme. E1 activates RUB1/NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a RUB1-ECR1 thioester and free AMP. E1 finally transfers RUB1 to the catalytic cysteine of RCE1. Belongs to the ubiquitin-activating E1 family. ULA1 subfamily.	0.461
A0A0D2PKB5	A0A0D2TR54	Uncharacterized protein.	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	0.759
A0A0D2RJ45	A0A0D2MMQ1	ThiF domain-containing protein.	ThiF domain-containing protein.	0.900
A0A0D2RJ45	A0A0D2NXK1	ThiF domain-containing protein.	E2_bind domain-containing protein.	0.464
A0A0D2RJ45	A0A0D2PKB5	ThiF domain-containing protein.	Uncharacterized protein.	0.404
A0A0D2RJ45	A0A0D2T3Z0	ThiF domain-containing protein.	ThiF domain-containing protein.	0.404
A0A0D2RLU1	A0A0D2NXK1	NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric E1 enzyme. E1 activates RUB1/NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a RUB1-ECR1 thioester and free AMP. E1 finally transfers RUB1 to the catalytic cysteine of RCE1. Belongs to the ubiquitin-activating E1 family. ULA1 subfamily.	E2_bind domain-containing protein.	0.996