(46 nodes) Autophagy - other network (Gossypium raimondii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0D2MAZ2	Serine/threonine-protein phosphatase. (306 aa)
	A0A0D2MYN9	Uncharacterized protein. (526 aa)
	A0A0D2N688	WD_REPEATS_REGION domain-containing protein. (1355 aa)
	A0A0D2N8S5	Autophagy-related protein. (118 aa)
	A0A0D2NNM7	Autophagy-related protein. (119 aa)
	A0A0D2P569	Serine/threonine-protein phosphatase. (312 aa)
	A0A0D2P8Z0	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family. (866 aa)
	A0A0D2PUZ6	Uncharacterized protein. (2019 aa)
	A0A0D2PY03	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family. (2476 aa)
	A0A0D2Q8J8	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (814 aa)
	A0A0D2QHK4	WD_REPEATS_REGION domain-containing protein. (328 aa)
	A0A0D2QHS5	Serine/threonine-protein phosphatase. (310 aa)
	A0A0D2QR76	Autophagy-related protein. (127 aa)
	A0A0D2QRU6	Autophagy-related protein 3. (314 aa)
	A0A0D2QUD2	Autophagy_act_C domain-containing protein. (227 aa)
	A0A0D2QW31	Autophagy-related protein. (135 aa)
	A0A0D2QYS4	Autophagy-related protein. (117 aa)
	A0A0D2QYV0	Autophagy-related protein 3. (313 aa)
	A0A0D2R619	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family. (2476 aa)
	A0A0D2RBC3	Uncharacterized protein. (217 aa)
	A0A0D2RF39	Autophagy-related protein. (122 aa)
	A0A0D2RLN9	WD_REPEATS_REGION domain-containing protein. (1364 aa)
	A0A0D2RR48	Serine/threonine-protein phosphatase. (312 aa)
	A0A0D2RSY8	Uncharacterized protein. (1549 aa)
	A0A0D2RUV2	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family. (908 aa)
	A0A0D2RV89	Uncharacterized protein. (402 aa)
	A0A0D2S0M9	Uncharacterized protein. (375 aa)
	A0A0D2SAA2	WD_REPEATS_REGION domain-containing protein. (509 aa)
	A0A0D2SDB3	Serine/threonine-protein phosphatase. (306 aa)
	A0A0D2SXS0	ATG13 domain-containing protein. (662 aa)
	A0A0D2SXT5	Cysteine protease. (488 aa)
	A0A0D2T2Y7	Serine/threonine-protein phosphatase. (306 aa)
	A0A0D2TB78	ATG11 domain-containing protein. (1152 aa)
	A0A0D2TD18	ATG13 domain-containing protein. (622 aa)
	A0A0D2TDJ1	Uncharacterized protein. (388 aa)
	A0A0D2TGI4	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation. Belongs to the ATG12 family. (94 aa)
	A0A0D2THL0	ATG13 domain-containing protein. (641 aa)
	A0A0D2TN80	Serine/threonine-protein phosphatase. (306 aa)
	A0A0D2TR54	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy. (711 aa)
	A0A0D2TUX9	Autophagy-related protein. (169 aa)
	A0A0D2U1Z6	Serine/threonine-protein phosphatase. (313 aa)
	A0A0D2ULP2	Autophagy-related protein. (140 aa)
	A0A0D2V4V1	Protein kinase domain-containing protein. (721 aa)
	A0A0D2VDA9	Autophagy-related protein. (187 aa)
	A0A0D2VGL8	Autophagy-related protein. (123 aa)
	A0A0D2W981	Serine/threonine-protein phosphatase. (312 aa)

Your Current Organism:

Gossypium raimondii

NCBI taxonomy Id: 29730
Other names: G. raimondii, Gossypium raimondii Ulbr.

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D2MAZ2	A0A0D2RBC3	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.650
A0A0D2MAZ2	A0A0D2RV89	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.972
A0A0D2MAZ2	A0A0D2SXS0	Serine/threonine-protein phosphatase.	ATG13 domain-containing protein.	0.653
A0A0D2MAZ2	A0A0D2TB78	Serine/threonine-protein phosphatase.	ATG11 domain-containing protein.	0.652
A0A0D2MAZ2	A0A0D2TD18	Serine/threonine-protein phosphatase.	ATG13 domain-containing protein.	0.653
A0A0D2MAZ2	A0A0D2TDJ1	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.972
A0A0D2MAZ2	A0A0D2THL0	Serine/threonine-protein phosphatase.	ATG13 domain-containing protein.	0.653
A0A0D2MAZ2	A0A0D2V4V1	Serine/threonine-protein phosphatase.	Protein kinase domain-containing protein.	0.668
A0A0D2MYN9	A0A0D2N688	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.476
A0A0D2MYN9	A0A0D2N8S5	Uncharacterized protein.	Autophagy-related protein.	0.764
A0A0D2MYN9	A0A0D2NNM7	Uncharacterized protein.	Autophagy-related protein.	0.758
A0A0D2MYN9	A0A0D2P8Z0	Uncharacterized protein.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.860
A0A0D2MYN9	A0A0D2PUZ6	Uncharacterized protein.	Uncharacterized protein.	0.586
A0A0D2MYN9	A0A0D2PY03	Uncharacterized protein.	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.	0.403
A0A0D2MYN9	A0A0D2Q8J8	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.995
A0A0D2MYN9	A0A0D2QR76	Uncharacterized protein.	Autophagy-related protein.	0.764
A0A0D2MYN9	A0A0D2QRU6	Uncharacterized protein.	Autophagy-related protein 3.	0.906
A0A0D2MYN9	A0A0D2QUD2	Uncharacterized protein.	Autophagy_act_C domain-containing protein.	0.585
A0A0D2MYN9	A0A0D2QW31	Uncharacterized protein.	Autophagy-related protein.	0.761
A0A0D2MYN9	A0A0D2QYS4	Uncharacterized protein.	Autophagy-related protein.	0.761