(6 nodes) snRNA transcription network (Vitis vinifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D7T590_VITVI	Uncharacterized protein. (91 aa)
	D7T5Z0_VITVI	Uncharacterized protein. (196 aa)
	D7T5Z1_VITVI	Uncharacterized protein. (245 aa)
	D7TC57_VITVI	Uncharacterized protein. (281 aa)
	D7TRZ9_VITVI	Uncharacterized protein. (245 aa)
	D7U6Y8_VITVI	Uncharacterized protein. (103 aa)

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7T590_VITVI	D7T5Z0_VITVI	D7T590	D7T5Z0	Uncharacterized protein.	Uncharacterized protein.	0.540
D7T590_VITVI	D7T5Z1_VITVI	D7T590	D7T5Z1	Uncharacterized protein.	Uncharacterized protein.	0.540
D7T590_VITVI	D7TC57_VITVI	D7T590	D7TC57	Uncharacterized protein.	Uncharacterized protein.	0.540
D7T590_VITVI	D7TRZ9_VITVI	D7T590	D7TRZ9	Uncharacterized protein.	Uncharacterized protein.	0.540
D7T590_VITVI	D7U6Y8_VITVI	D7T590	D7U6Y8	Uncharacterized protein.	Uncharacterized protein.	0.542
D7T5Z0_VITVI	D7T590_VITVI	D7T5Z0	D7T590	Uncharacterized protein.	Uncharacterized protein.	0.540
D7T5Z0_VITVI	D7T5Z1_VITVI	D7T5Z0	D7T5Z1	Uncharacterized protein.	Uncharacterized protein.	0.540
D7T5Z0_VITVI	D7TC57_VITVI	D7T5Z0	D7TC57	Uncharacterized protein.	Uncharacterized protein.	0.540
D7T5Z0_VITVI	D7TRZ9_VITVI	D7T5Z0	D7TRZ9	Uncharacterized protein.	Uncharacterized protein.	0.540
D7T5Z0_VITVI	D7U6Y8_VITVI	D7T5Z0	D7U6Y8	Uncharacterized protein.	Uncharacterized protein.	0.540
D7T5Z1_VITVI	D7T590_VITVI	D7T5Z1	D7T590	Uncharacterized protein.	Uncharacterized protein.	0.540
D7T5Z1_VITVI	D7T5Z0_VITVI	D7T5Z1	D7T5Z0	Uncharacterized protein.	Uncharacterized protein.	0.540
D7T5Z1_VITVI	D7TC57_VITVI	D7T5Z1	D7TC57	Uncharacterized protein.	Uncharacterized protein.	0.540
D7T5Z1_VITVI	D7TRZ9_VITVI	D7T5Z1	D7TRZ9	Uncharacterized protein.	Uncharacterized protein.	0.548
D7T5Z1_VITVI	D7U6Y8_VITVI	D7T5Z1	D7U6Y8	Uncharacterized protein.	Uncharacterized protein.	0.540
D7TC57_VITVI	D7T590_VITVI	D7TC57	D7T590	Uncharacterized protein.	Uncharacterized protein.	0.540
D7TC57_VITVI	D7T5Z0_VITVI	D7TC57	D7T5Z0	Uncharacterized protein.	Uncharacterized protein.	0.540
D7TC57_VITVI	D7T5Z1_VITVI	D7TC57	D7T5Z1	Uncharacterized protein.	Uncharacterized protein.	0.540
D7TC57_VITVI	D7TRZ9_VITVI	D7TC57	D7TRZ9	Uncharacterized protein.	Uncharacterized protein.	0.540
D7TC57_VITVI	D7U6Y8_VITVI	D7TC57	D7U6Y8	Uncharacterized protein.	Uncharacterized protein.	0.540