(18 nodes) Mixed, incl. 4-coumarate-CoA ligase activity, and Stilbenoid, diarylheptanoid and gingerol biosynthesis network (Vitis vinifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PAL1	Phenylalanine ammonia-lyase. (717 aa)
	VITISV_026676	Uncharacterized protein; Belongs to the cytochrome P450 family. (505 aa)
	D7TCJ8_VITVI	Phenylalanine ammonia-lyase. (665 aa)
	CCOAMT	Uncharacterized protein. (242 aa)
	COMT	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (363 aa)
	D7U877_VITVI	Epimerase domain-containing protein. (338 aa)
	F6GST0_VITVI	Uncharacterized protein. (550 aa)
	F6GXF4_VITVI	Uncharacterized protein. (539 aa)
	F6GXF5_VITVI	Uncharacterized protein. (548 aa)
	F6H9P8_VITVI	Uncharacterized protein; Belongs to the cytochrome P450 family. (532 aa)
	PAL	Phenylalanine ammonia-lyase. (710 aa)
	4CL	Uncharacterized protein. (548 aa)
	STS	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family. (392 aa)
	F6HP39_VITVI	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family. (392 aa)
	PAL2	Phenylalanine ammonia-lyase. (710 aa)
	F6HSS2_VITVI	Hydrolase_4 domain-containing protein. (385 aa)
	F6I6P6_VITVI	Uncharacterized protein; Belongs to the cytochrome P450 family. (534 aa)
	STS-3	Stilbene synthase 3; Mediates resistance to pathogens which are sensitive to stilbenes; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family. (392 aa)

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
4CL	CCOAMT	F6HEF8	D7TPG4	Uncharacterized protein.	Uncharacterized protein.	0.906
4CL	COMT	F6HEF8	D7TVU3	Uncharacterized protein.	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.	0.859
4CL	D7TCJ8_VITVI	F6HEF8	D7TCJ8	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.848
4CL	D7U877_VITVI	F6HEF8	D7U877	Uncharacterized protein.	Epimerase domain-containing protein.	0.976
4CL	F6H9P8_VITVI	F6HEF8	F6H9P8	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.934
4CL	F6HP39_VITVI	F6HEF8	F6HP39	Uncharacterized protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.	0.886
4CL	F6HSS2_VITVI	F6HEF8	F6HSS2	Uncharacterized protein.	Hydrolase_4 domain-containing protein.	0.857
4CL	F6I6P6_VITVI	F6HEF8	F6I6P6	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.934
4CL	PAL	F6HEF8	F6HEB5	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.944
4CL	PAL1	F6HEF8	A5BPT8	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.946
4CL	PAL2	F6HEF8	F6HR33	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.948
4CL	STS	F6HEF8	F6HP15	Uncharacterized protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.	0.886
4CL	STS-3	F6HEF8	P51071	Uncharacterized protein.	Stilbene synthase 3; Mediates resistance to pathogens which are sensitive to stilbenes; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.	0.886
4CL	VITISV_026676	F6HEF8	A5BRL4	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.944
CCOAMT	4CL	D7TPG4	F6HEF8	Uncharacterized protein.	Uncharacterized protein.	0.906
CCOAMT	COMT	D7TPG4	D7TVU3	Uncharacterized protein.	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.	0.675
CCOAMT	D7TCJ8_VITVI	D7TPG4	D7TCJ8	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.678
CCOAMT	D7U877_VITVI	D7TPG4	D7U877	Uncharacterized protein.	Epimerase domain-containing protein.	0.973
CCOAMT	F6GST0_VITVI	D7TPG4	F6GST0	Uncharacterized protein.	Uncharacterized protein.	0.889
CCOAMT	F6GXF4_VITVI	D7TPG4	F6GXF4	Uncharacterized protein.	Uncharacterized protein.	0.884