49 items (Vitis vinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VITISV_041221	Brix domain-containing protein. (293 aa)
	26N20_60	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (229 aa)
	D7SLW2_VITVI	Uncharacterized protein. (391 aa)
	D7SMJ6_VITVI	RRP7 domain-containing protein. (313 aa)
	D7SMM8_VITVI	S4 RNA-binding domain-containing protein. (182 aa)
	D7SY88_VITVI	WD_REPEATS_REGION domain-containing protein. (628 aa)
	D7T0V5_VITVI	Uncharacterized protein; Belongs to the DEAD box helicase family. (489 aa)
	D7T3B4_VITVI	Uncharacterized protein. (101 aa)
	D7T591_VITVI	Uncharacterized protein. (235 aa)
	D7T6J0_VITVI	NOP5NT domain-containing protein. (122 aa)
	D7T7H3_VITVI	Uncharacterized protein. (191 aa)
	D7TF06_VITVI	Uncharacterized protein. (271 aa)
	D7THK7_VITVI	WD_REPEATS_REGION domain-containing protein. (905 aa)
	D7TKH3_VITVI	WD_REPEATS_REGION domain-containing protein. (519 aa)
	D7TR15_VITVI	Uncharacterized protein. (96 aa)
	D7TUQ9_VITVI	DUF663 domain-containing protein. (91 aa)
	D7TX15_VITVI	Uncharacterized protein. (376 aa)
	D7UBL1_VITVI	Uncharacterized protein. (753 aa)
	D7UBS0_VITVI	WD_REPEATS_REGION domain-containing protein. (536 aa)
	E0CNQ9_VITVI	Uncharacterized protein. (320 aa)
	E0CVR6_VITVI	Uncharacterized protein. (652 aa)
	F6GST1_VITVI	Nop domain-containing protein. (558 aa)
	F6GWB9_VITVI	Bms1-type G domain-containing protein. (757 aa)
	F6GWC0_VITVI	DUF663 domain-containing protein. (472 aa)
	F6GWD9_VITVI	DRIM domain-containing protein. (1587 aa)
	F6GWE0_VITVI	Uncharacterized protein. (176 aa)
	F6GWW2_VITVI	Uncharacterized protein. (1060 aa)
	F6GXL7_VITVI	WD_REPEATS_REGION domain-containing protein. (568 aa)
	F6H187_VITVI	WD_REPEATS_REGION domain-containing protein. (845 aa)
	F6H196_VITVI	Uncharacterized protein. (392 aa)
	F6H683_VITVI	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (386 aa)
	F6HAX1_VITVI	Sas10 domain-containing protein. (695 aa)
	F6HDH5_VITVI	Uncharacterized protein. (63 aa)
	F6HE40_VITVI	Fcf2 domain-containing protein. (300 aa)
	F6HEE2_VITVI	WD_REPEATS_REGION domain-containing protein. (900 aa)
	F6HH82_VITVI	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (130 aa)
	F6HKA1_VITVI	Uncharacterized protein. (271 aa)
	WDR3	WD_REPEATS_REGION domain-containing protein. (952 aa)
	F6HLF1_VITVI	Uncharacterized protein. (1904 aa)
	F6HNR9_VITVI	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	F6HQ31_VITVI	WD_REPEATS_REGION domain-containing protein. (528 aa)
	F6HWI5_VITVI	WD_REPEATS_REGION domain-containing protein. (569 aa)
	F6HX93_VITVI	WD_REPEATS_REGION domain-containing protein. (602 aa)
	F6I202_VITVI	WD_REPEATS_REGION domain-containing protein. (144 aa)
	F6I2G7_VITVI	Uncharacterized protein. (113 aa)
	F6I2S1_VITVI	U3snoRNP10 domain-containing protein. (845 aa)
	F6I2S2_VITVI	BP28CT domain-containing protein. (1164 aa)
	F6I624_VITVI	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (325 aa)
	F6I625_VITVI	Uncharacterized protein. (316 aa)

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
26N20_60	D7SLW2_VITVI	C5DB53	D7SLW2	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Uncharacterized protein.	0.982
26N20_60	D7SMJ6_VITVI	C5DB53	D7SMJ6	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	RRP7 domain-containing protein.	0.992
26N20_60	D7SMM8_VITVI	C5DB53	D7SMM8	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	S4 RNA-binding domain-containing protein.	0.997
26N20_60	D7SY88_VITVI	C5DB53	D7SY88	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	WD_REPEATS_REGION domain-containing protein.	0.979
26N20_60	D7T0V5_VITVI	C5DB53	D7T0V5	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.882
26N20_60	D7T3B4_VITVI	C5DB53	D7T3B4	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Uncharacterized protein.	0.984
26N20_60	D7T591_VITVI	C5DB53	D7T591	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Uncharacterized protein.	0.985
26N20_60	D7T6J0_VITVI	C5DB53	D7T6J0	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	NOP5NT domain-containing protein.	0.966
26N20_60	D7T7H3_VITVI	C5DB53	D7T7H3	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Uncharacterized protein.	0.982
26N20_60	D7TF06_VITVI	C5DB53	D7TF06	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Uncharacterized protein.	0.984
26N20_60	D7THK7_VITVI	C5DB53	D7THK7	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	WD_REPEATS_REGION domain-containing protein.	0.987
26N20_60	D7TKH3_VITVI	C5DB53	D7TKH3	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	WD_REPEATS_REGION domain-containing protein.	0.985
26N20_60	D7TR15_VITVI	C5DB53	D7TR15	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Uncharacterized protein.	0.994
26N20_60	D7TUQ9_VITVI	C5DB53	D7TUQ9	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	DUF663 domain-containing protein.	0.942
26N20_60	D7TX15_VITVI	C5DB53	D7TX15	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Uncharacterized protein.	0.968
26N20_60	D7UBL1_VITVI	C5DB53	D7UBL1	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Uncharacterized protein.	0.931
26N20_60	D7UBS0_VITVI	C5DB53	D7UBS0	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	WD_REPEATS_REGION domain-containing protein.	0.999
26N20_60	E0CNQ9_VITVI	C5DB53	E0CNQ9	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Uncharacterized protein.	0.995
26N20_60	E0CVR6_VITVI	C5DB53	E0CVR6	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Uncharacterized protein.	0.994
26N20_60	F6GST1_VITVI	C5DB53	F6GST1	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Nop domain-containing protein.	0.977