26 items (Vitis vinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VITISV_041221	Brix domain-containing protein. (293 aa)
	26N20_60	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (229 aa)
	D7SMM8_VITVI	S4 RNA-binding domain-containing protein. (182 aa)
	D7SY88_VITVI	WD_REPEATS_REGION domain-containing protein. (628 aa)
	D7T591_VITVI	Uncharacterized protein. (235 aa)
	D7T7H3_VITVI	Uncharacterized protein. (191 aa)
	D7THK7_VITVI	WD_REPEATS_REGION domain-containing protein. (905 aa)
	D7TKH3_VITVI	WD_REPEATS_REGION domain-containing protein. (519 aa)
	D7TX15_VITVI	Uncharacterized protein. (376 aa)
	D7UBS0_VITVI	WD_REPEATS_REGION domain-containing protein. (536 aa)
	E0CNQ9_VITVI	Uncharacterized protein. (320 aa)
	E0CVR6_VITVI	Uncharacterized protein. (652 aa)
	F6GST1_VITVI	Nop domain-containing protein. (558 aa)
	F6GXL7_VITVI	WD_REPEATS_REGION domain-containing protein. (568 aa)
	F6H187_VITVI	WD_REPEATS_REGION domain-containing protein. (845 aa)
	F6H683_VITVI	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (386 aa)
	F6HAX1_VITVI	Sas10 domain-containing protein. (695 aa)
	F6HEE2_VITVI	WD_REPEATS_REGION domain-containing protein. (900 aa)
	WDR3	WD_REPEATS_REGION domain-containing protein. (952 aa)
	F6HLF1_VITVI	Uncharacterized protein. (1904 aa)
	F6HQ31_VITVI	WD_REPEATS_REGION domain-containing protein. (528 aa)
	F6HWI5_VITVI	WD_REPEATS_REGION domain-containing protein. (569 aa)
	F6I2G7_VITVI	Uncharacterized protein. (113 aa)
	F6I2S1_VITVI	U3snoRNP10 domain-containing protein. (845 aa)
	F6I2S2_VITVI	BP28CT domain-containing protein. (1164 aa)
	F6I624_VITVI	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (325 aa)

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
26N20_60	D7SMM8_VITVI	C5DB53	D7SMM8	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	S4 RNA-binding domain-containing protein.	0.997
26N20_60	D7SY88_VITVI	C5DB53	D7SY88	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	WD_REPEATS_REGION domain-containing protein.	0.979
26N20_60	D7T591_VITVI	C5DB53	D7T591	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Uncharacterized protein.	0.985
26N20_60	D7T7H3_VITVI	C5DB53	D7T7H3	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Uncharacterized protein.	0.982
26N20_60	D7THK7_VITVI	C5DB53	D7THK7	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	WD_REPEATS_REGION domain-containing protein.	0.987
26N20_60	D7TKH3_VITVI	C5DB53	D7TKH3	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	WD_REPEATS_REGION domain-containing protein.	0.985
26N20_60	D7TX15_VITVI	C5DB53	D7TX15	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Uncharacterized protein.	0.968
26N20_60	D7UBS0_VITVI	C5DB53	D7UBS0	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	WD_REPEATS_REGION domain-containing protein.	0.999
26N20_60	E0CNQ9_VITVI	C5DB53	E0CNQ9	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Uncharacterized protein.	0.995
26N20_60	E0CVR6_VITVI	C5DB53	E0CVR6	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Uncharacterized protein.	0.994
26N20_60	F6GST1_VITVI	C5DB53	F6GST1	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Nop domain-containing protein.	0.977
26N20_60	F6GXL7_VITVI	C5DB53	F6GXL7	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	WD_REPEATS_REGION domain-containing protein.	0.995
26N20_60	F6H187_VITVI	C5DB53	F6H187	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	WD_REPEATS_REGION domain-containing protein.	0.992
26N20_60	F6H683_VITVI	C5DB53	F6H683	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.997
26N20_60	F6HAX1_VITVI	C5DB53	F6HAX1	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Sas10 domain-containing protein.	0.999
26N20_60	F6HEE2_VITVI	C5DB53	F6HEE2	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	WD_REPEATS_REGION domain-containing protein.	0.961
26N20_60	F6HLF1_VITVI	C5DB53	F6HLF1	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Uncharacterized protein.	0.986
26N20_60	F6HQ31_VITVI	C5DB53	F6HQ31	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	WD_REPEATS_REGION domain-containing protein.	0.988
26N20_60	F6HWI5_VITVI	C5DB53	F6HWI5	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	WD_REPEATS_REGION domain-containing protein.	0.995
26N20_60	F6I2G7_VITVI	C5DB53	F6I2G7	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Uncharacterized protein.	0.985