STRINGSTRING
VITISV_035660 VITISV_035660 D7SHJ7_VITVI D7SHJ7_VITVI D7SVC1_VITVI D7SVC1_VITVI D7T050_VITVI D7T050_VITVI D7TDA2_VITVI D7TDA2_VITVI D7TPA8_VITVI D7TPA8_VITVI D7TTT7_VITVI D7TTT7_VITVI D7TWJ6_VITVI D7TWJ6_VITVI D7U276_VITVI D7U276_VITVI D7U294_VITVI D7U294_VITVI E0CU59_VITVI E0CU59_VITVI F6GXI5_VITVI F6GXI5_VITVI F6H4J0_VITVI F6H4J0_VITVI F6H6T1_VITVI F6H6T1_VITVI F6H8U7_VITVI F6H8U7_VITVI F6HAK7_VITVI F6HAK7_VITVI F6HE68_VITVI F6HE68_VITVI F6HTT9_VITVI F6HTT9_VITVI F6I0L2_VITVI F6I0L2_VITVI
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
VITISV_03566060S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (187 aa)
D7SHJ7_VITVIProtein MAK16 homolog; Belongs to the MAK16 family. (296 aa)
D7SVC1_VITVIRibosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. (438 aa)
D7T050_VITVIRibosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (229 aa)
D7TDA2_VITVIUncharacterized protein. (274 aa)
D7TPA8_VITVIG domain-containing protein. (367 aa)
D7TTT7_VITVIWD_REPEATS_REGION domain-containing protein. (421 aa)
D7TWJ6_VITVIPescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (607 aa)
D7U276_VITVIUncharacterized protein. (197 aa)
D7U294_VITVIBrix domain-containing protein. (330 aa)
E0CU59_VITVIBrix domain-containing protein. (346 aa)
F6GXI5_VITVIUncharacterized protein. (547 aa)
F6H4J0_VITVIBrix domain-containing protein. (346 aa)
F6H6T1_VITVIUncharacterized protein. (260 aa)
F6H8U7_VITVIUncharacterized protein. (356 aa)
F6HAK7_VITVIUncharacterized protein. (302 aa)
F6HE68_VITVI60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (187 aa)
F6HTT9_VITVIRRM domain-containing protein. (227 aa)
F6I0L2_VITVIPutative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits. (851 aa)
Your Current Organism:
Vitis vinifera
NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape
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