6 items (Vitis vinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D7SI06_VITVI	Uncharacterized protein. (600 aa)
	D7SJ23_VITVI	Uncharacterized protein. (469 aa)
	EDS1	Uncharacterized protein. (596 aa)
	F6H4E0_VITVI	Uncharacterized protein. (619 aa)
	F6HKP6_VITVI	Uncharacterized protein. (280 aa)
	F6HV24_VITVI	Uncharacterized protein. (602 aa)

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7SI06_VITVI	F6H4E0_VITVI	D7SI06	F6H4E0	Uncharacterized protein.	Uncharacterized protein.	0.824
D7SI06_VITVI	F6HV24_VITVI	D7SI06	F6HV24	Uncharacterized protein.	Uncharacterized protein.	0.528
D7SJ23_VITVI	EDS1	D7SJ23	F6GSX7	Uncharacterized protein.	Uncharacterized protein.	0.624
D7SJ23_VITVI	F6H4E0_VITVI	D7SJ23	F6H4E0	Uncharacterized protein.	Uncharacterized protein.	0.665
D7SJ23_VITVI	F6HKP6_VITVI	D7SJ23	F6HKP6	Uncharacterized protein.	Uncharacterized protein.	0.617
EDS1	D7SJ23_VITVI	F6GSX7	D7SJ23	Uncharacterized protein.	Uncharacterized protein.	0.624
EDS1	F6H4E0_VITVI	F6GSX7	F6H4E0	Uncharacterized protein.	Uncharacterized protein.	0.847
EDS1	F6HV24_VITVI	F6GSX7	F6HV24	Uncharacterized protein.	Uncharacterized protein.	0.526
F6H4E0_VITVI	D7SI06_VITVI	F6H4E0	D7SI06	Uncharacterized protein.	Uncharacterized protein.	0.824
F6H4E0_VITVI	D7SJ23_VITVI	F6H4E0	D7SJ23	Uncharacterized protein.	Uncharacterized protein.	0.665
F6H4E0_VITVI	EDS1	F6H4E0	F6GSX7	Uncharacterized protein.	Uncharacterized protein.	0.847
F6H4E0_VITVI	F6HKP6_VITVI	F6H4E0	F6HKP6	Uncharacterized protein.	Uncharacterized protein.	0.472
F6H4E0_VITVI	F6HV24_VITVI	F6H4E0	F6HV24	Uncharacterized protein.	Uncharacterized protein.	0.410
F6HKP6_VITVI	D7SJ23_VITVI	F6HKP6	D7SJ23	Uncharacterized protein.	Uncharacterized protein.	0.617
F6HKP6_VITVI	F6H4E0_VITVI	F6HKP6	F6H4E0	Uncharacterized protein.	Uncharacterized protein.	0.472
F6HV24_VITVI	D7SI06_VITVI	F6HV24	D7SI06	Uncharacterized protein.	Uncharacterized protein.	0.528
F6HV24_VITVI	EDS1	F6HV24	F6GSX7	Uncharacterized protein.	Uncharacterized protein.	0.526
F6HV24_VITVI	F6H4E0_VITVI	F6HV24	F6H4E0	Uncharacterized protein.	Uncharacterized protein.	0.410