(39 nodes) Transcription export complex, and mRNA surveillance pathway network (Vitis vinifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VITISV_004943	WD_REPEATS_REGION domain-containing protein. (313 aa)
	D7SKJ4_VITVI	RRM domain-containing protein. (243 aa)
	D7ST85_VITVI	Pinin_SDK_memA domain-containing protein. (434 aa)
	D7SVY5_VITVI	Uncharacterized protein. (210 aa)
	D7T1C3_VITVI	Uncharacterized protein. (267 aa)
	D7T5U0_VITVI	Uncharacterized protein. (122 aa)
	D7TCM6_VITVI	Uncharacterized protein. (372 aa)
	D7TGS2_VITVI	Smg4_UPF3 domain-containing protein. (519 aa)
	D7TLX0_VITVI	RRM domain-containing protein. (160 aa)
	D7TRZ5_VITVI	RRM domain-containing protein. (145 aa)
	D7TSN8_VITVI	RRM domain-containing protein. (269 aa)
	D7TTH5_VITVI	Helicase ATP-binding domain-containing protein. (1267 aa)
	D7TU93_VITVI	RRM domain-containing protein. (180 aa)
	D7TX68_VITVI	Uncharacterized protein. (613 aa)
	D7U112_VITVI	Uncharacterized protein. (428 aa)
	D7U4F5_VITVI	RRM domain-containing protein. (202 aa)
	D7U7P2_VITVI	Uncharacterized protein. (152 aa)
	E0CRG0_VITVI	SAP domain-containing protein. (689 aa)
	F6GYB4_VITVI	Smg4_UPF3 domain-containing protein. (341 aa)
	F6H1D0_VITVI	Uncharacterized protein. (816 aa)
	F6H315_VITVI	Protein kinase domain-containing protein. (619 aa)
	F6H316_VITVI	Uncharacterized protein. (457 aa)
	F6H4N5_VITVI	SAP domain-containing protein. (662 aa)
	F6HC41_VITVI	Tho2 domain-containing protein. (412 aa)
	F6HCZ0_VITVI	Helicase ATP-binding domain-containing protein. (209 aa)
	F6HEI2_VITVI	Uncharacterized protein. (96 aa)
	F6HFB6_VITVI	Uncharacterized protein. (649 aa)
	F6HFB7_VITVI	Tho2 domain-containing protein. (1209 aa)
	F6HG13_VITVI	Uncharacterized protein. (770 aa)
	F6HH75_VITVI	Uncharacterized protein. (543 aa)
	F6HHF5_VITVI	Uncharacterized protein. (415 aa)
	F6HMF8_VITVI	Tho2 domain-containing protein. (192 aa)
	F6HNK8_VITVI	Uncharacterized protein. (1232 aa)
	F6HQW1_VITVI	Uncharacterized protein. (231 aa)
	F6HVB5_VITVI	Uncharacterized protein. (601 aa)
	F6HVB9_VITVI	Uncharacterized protein. (101 aa)
	F6HVT8_VITVI	NAB domain-containing protein. (466 aa)
	F6I2M2_VITVI	Uncharacterized protein. (151 aa)
	F6I7S2_VITVI	Tho2 domain-containing protein. (192 aa)

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7SKJ4_VITVI	D7ST85_VITVI	D7SKJ4	D7ST85	RRM domain-containing protein.	Pinin_SDK_memA domain-containing protein.	0.694
D7SKJ4_VITVI	D7SVY5_VITVI	D7SKJ4	D7SVY5	RRM domain-containing protein.	Uncharacterized protein.	0.912
D7SKJ4_VITVI	D7T1C3_VITVI	D7SKJ4	D7T1C3	RRM domain-containing protein.	Uncharacterized protein.	0.858
D7SKJ4_VITVI	D7T5U0_VITVI	D7SKJ4	D7T5U0	RRM domain-containing protein.	Uncharacterized protein.	0.611
D7SKJ4_VITVI	D7TCM6_VITVI	D7SKJ4	D7TCM6	RRM domain-containing protein.	Uncharacterized protein.	0.809
D7SKJ4_VITVI	D7TGS2_VITVI	D7SKJ4	D7TGS2	RRM domain-containing protein.	Smg4_UPF3 domain-containing protein.	0.803
D7SKJ4_VITVI	D7TLX0_VITVI	D7SKJ4	D7TLX0	RRM domain-containing protein.	RRM domain-containing protein.	0.901
D7SKJ4_VITVI	D7TRZ5_VITVI	D7SKJ4	D7TRZ5	RRM domain-containing protein.	RRM domain-containing protein.	0.611
D7SKJ4_VITVI	D7TSN8_VITVI	D7SKJ4	D7TSN8	RRM domain-containing protein.	RRM domain-containing protein.	0.965
D7SKJ4_VITVI	D7TTH5_VITVI	D7SKJ4	D7TTH5	RRM domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.790
D7SKJ4_VITVI	D7TU93_VITVI	D7SKJ4	D7TU93	RRM domain-containing protein.	RRM domain-containing protein.	0.611
D7SKJ4_VITVI	D7TX68_VITVI	D7SKJ4	D7TX68	RRM domain-containing protein.	Uncharacterized protein.	0.972
D7SKJ4_VITVI	D7U112_VITVI	D7SKJ4	D7U112	RRM domain-containing protein.	Uncharacterized protein.	0.988
D7SKJ4_VITVI	D7U4F5_VITVI	D7SKJ4	D7U4F5	RRM domain-containing protein.	RRM domain-containing protein.	0.951
D7SKJ4_VITVI	D7U7P2_VITVI	D7SKJ4	D7U7P2	RRM domain-containing protein.	Uncharacterized protein.	0.970
D7SKJ4_VITVI	E0CRG0_VITVI	D7SKJ4	E0CRG0	RRM domain-containing protein.	SAP domain-containing protein.	0.727
D7SKJ4_VITVI	F6GYB4_VITVI	D7SKJ4	F6GYB4	RRM domain-containing protein.	Smg4_UPF3 domain-containing protein.	0.803
D7SKJ4_VITVI	F6H1D0_VITVI	D7SKJ4	F6H1D0	RRM domain-containing protein.	Uncharacterized protein.	0.988
D7SKJ4_VITVI	F6H315_VITVI	D7SKJ4	F6H315	RRM domain-containing protein.	Protein kinase domain-containing protein.	0.891
D7SKJ4_VITVI	F6H316_VITVI	D7SKJ4	F6H316	RRM domain-containing protein.	Uncharacterized protein.	0.988