(21 nodes) Mixed, incl. F-box associated domain, type 3, and E3 ubiquitin-protein ligase MARCH-like network (Vitis vinifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VITISV_022080	LRAT domain-containing protein. (262 aa)
	VITISV_042107	Uncharacterized protein. (265 aa)
	D7SX02_VITVI	FBA_3 domain-containing protein. (265 aa)
	D7T016_VITVI	RING-type domain-containing protein. (451 aa)
	D7T9A1_VITVI	RING-type domain-containing protein. (465 aa)
	D7TIT6_VITVI	Uncharacterized protein. (289 aa)
	D7TQF4_VITVI	F-box domain-containing protein. (474 aa)
	D7TX11_VITVI	RING-CH-type domain-containing protein. (274 aa)
	D7U2H4_VITVI	RING-CH-type domain-containing protein. (221 aa)
	D7UAI5_VITVI	Uncharacterized protein. (379 aa)
	E0CRN4_VITVI	Uncharacterized protein. (292 aa)
	F6H0K1_VITVI	RING-type domain-containing protein. (207 aa)
	F6H3Y7_VITVI	Uncharacterized protein. (477 aa)
	F6H551_VITVI	HSF_DOMAIN domain-containing protein. (369 aa)
	F6HA13_VITVI	F-box domain-containing protein. (341 aa)
	F6HFU0_VITVI	Uncharacterized protein. (644 aa)
	F6HPM6_VITVI	RING-type domain-containing protein. (420 aa)
	F6HWK5_VITVI	Uncharacterized protein. (40 aa)
	F6I100_VITVI	Uncharacterized protein; Belongs to the SKP1 family. (438 aa)
	F6I3R8_VITVI	F-box domain-containing protein. (360 aa)
	F6I3W3_VITVI	F-box domain-containing protein. (397 aa)

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7SX02_VITVI	D7T016_VITVI	D7SX02	D7T016	FBA_3 domain-containing protein.	RING-type domain-containing protein.	0.612
D7SX02_VITVI	D7T9A1_VITVI	D7SX02	D7T9A1	FBA_3 domain-containing protein.	RING-type domain-containing protein.	0.611
D7SX02_VITVI	D7TIT6_VITVI	D7SX02	D7TIT6	FBA_3 domain-containing protein.	Uncharacterized protein.	0.611
D7SX02_VITVI	D7TQF4_VITVI	D7SX02	D7TQF4	FBA_3 domain-containing protein.	F-box domain-containing protein.	0.612
D7SX02_VITVI	D7TX11_VITVI	D7SX02	D7TX11	FBA_3 domain-containing protein.	RING-CH-type domain-containing protein.	0.611
D7SX02_VITVI	D7U2H4_VITVI	D7SX02	D7U2H4	FBA_3 domain-containing protein.	RING-CH-type domain-containing protein.	0.611
D7SX02_VITVI	D7UAI5_VITVI	D7SX02	D7UAI5	FBA_3 domain-containing protein.	Uncharacterized protein.	0.621
D7SX02_VITVI	E0CRN4_VITVI	D7SX02	E0CRN4	FBA_3 domain-containing protein.	Uncharacterized protein.	0.611
D7SX02_VITVI	F6H0K1_VITVI	D7SX02	F6H0K1	FBA_3 domain-containing protein.	RING-type domain-containing protein.	0.611
D7SX02_VITVI	F6H3Y7_VITVI	D7SX02	F6H3Y7	FBA_3 domain-containing protein.	Uncharacterized protein.	0.611
D7SX02_VITVI	F6HA13_VITVI	D7SX02	F6HA13	FBA_3 domain-containing protein.	F-box domain-containing protein.	0.612
D7SX02_VITVI	F6HPM6_VITVI	D7SX02	F6HPM6	FBA_3 domain-containing protein.	RING-type domain-containing protein.	0.618
D7SX02_VITVI	F6HWK5_VITVI	D7SX02	F6HWK5	FBA_3 domain-containing protein.	Uncharacterized protein.	0.611
D7SX02_VITVI	F6I100_VITVI	D7SX02	F6I100	FBA_3 domain-containing protein.	Uncharacterized protein; Belongs to the SKP1 family.	0.617
D7SX02_VITVI	F6I3R8_VITVI	D7SX02	F6I3R8	FBA_3 domain-containing protein.	F-box domain-containing protein.	0.612
D7SX02_VITVI	F6I3W3_VITVI	D7SX02	F6I3W3	FBA_3 domain-containing protein.	F-box domain-containing protein.	0.611
D7SX02_VITVI	VITISV_042107	D7SX02	A5B3W2	FBA_3 domain-containing protein.	Uncharacterized protein.	0.611
D7T016_VITVI	D7SX02_VITVI	D7T016	D7SX02	RING-type domain-containing protein.	FBA_3 domain-containing protein.	0.612
D7T016_VITVI	D7T9A1_VITVI	D7T016	D7T9A1	RING-type domain-containing protein.	RING-type domain-containing protein.	0.613
D7T016_VITVI	D7TIT6_VITVI	D7T016	D7TIT6	RING-type domain-containing protein.	Uncharacterized protein.	0.619