(12 nodes) Spermine metabolic process, and Spermidine synthase activity network (Vitis vinifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D7SHU7_VITVI	PABS domain-containing protein; Belongs to the spermidine/spermine synthase family. (374 aa)
	D7T359_VITVI	Amino_oxidase domain-containing protein. (503 aa)
	D7TDE4_VITVI	Amino_oxidase domain-containing protein. (495 aa)
	D7TDE5_VITVI	Amino_oxidase domain-containing protein. (505 aa)
	D7TDE8_VITVI	Amino_oxidase domain-containing protein. (489 aa)
	D7TDQ5_VITVI	Amino_oxidase domain-containing protein. (490 aa)
	D7TNQ7_VITVI	PABS domain-containing protein; Belongs to the spermidine/spermine synthase family. (297 aa)
	E0CTZ8_VITVI	Amino_oxidase domain-containing protein. (490 aa)
	SAMDC	Uncharacterized protein. (405 aa)
	PVVSPMS	PABS domain-containing protein; Belongs to the spermidine/spermine synthase family. (369 aa)
	F6HDK0_VITVI	S-adenosylmethionine decarboxylase proenzyme. (350 aa)
	F6HH53_VITVI	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family. (412 aa)

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7SHU7_VITVI	D7T359_VITVI	D7SHU7	D7T359	PABS domain-containing protein; Belongs to the spermidine/spermine synthase family.	Amino_oxidase domain-containing protein.	0.936
D7SHU7_VITVI	D7TDE4_VITVI	D7SHU7	D7TDE4	PABS domain-containing protein; Belongs to the spermidine/spermine synthase family.	Amino_oxidase domain-containing protein.	0.936
D7SHU7_VITVI	D7TDE5_VITVI	D7SHU7	D7TDE5	PABS domain-containing protein; Belongs to the spermidine/spermine synthase family.	Amino_oxidase domain-containing protein.	0.936
D7SHU7_VITVI	D7TDE8_VITVI	D7SHU7	D7TDE8	PABS domain-containing protein; Belongs to the spermidine/spermine synthase family.	Amino_oxidase domain-containing protein.	0.936
D7SHU7_VITVI	D7TDQ5_VITVI	D7SHU7	D7TDQ5	PABS domain-containing protein; Belongs to the spermidine/spermine synthase family.	Amino_oxidase domain-containing protein.	0.946
D7SHU7_VITVI	D7TNQ7_VITVI	D7SHU7	D7TNQ7	PABS domain-containing protein; Belongs to the spermidine/spermine synthase family.	PABS domain-containing protein; Belongs to the spermidine/spermine synthase family.	0.901
D7SHU7_VITVI	E0CTZ8_VITVI	D7SHU7	E0CTZ8	PABS domain-containing protein; Belongs to the spermidine/spermine synthase family.	Amino_oxidase domain-containing protein.	0.946
D7SHU7_VITVI	F6HDK0_VITVI	D7SHU7	F6HDK0	PABS domain-containing protein; Belongs to the spermidine/spermine synthase family.	S-adenosylmethionine decarboxylase proenzyme.	0.983
D7SHU7_VITVI	F6HH53_VITVI	D7SHU7	F6HH53	PABS domain-containing protein; Belongs to the spermidine/spermine synthase family.	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.985
D7SHU7_VITVI	PVVSPMS	D7SHU7	F6H6F3	PABS domain-containing protein; Belongs to the spermidine/spermine synthase family.	PABS domain-containing protein; Belongs to the spermidine/spermine synthase family.	0.919
D7SHU7_VITVI	SAMDC	D7SHU7	F6GVT0	PABS domain-containing protein; Belongs to the spermidine/spermine synthase family.	Uncharacterized protein.	0.985
D7T359_VITVI	D7SHU7_VITVI	D7T359	D7SHU7	Amino_oxidase domain-containing protein.	PABS domain-containing protein; Belongs to the spermidine/spermine synthase family.	0.936
D7T359_VITVI	D7TDE4_VITVI	D7T359	D7TDE4	Amino_oxidase domain-containing protein.	Amino_oxidase domain-containing protein.	0.903
D7T359_VITVI	D7TDE5_VITVI	D7T359	D7TDE5	Amino_oxidase domain-containing protein.	Amino_oxidase domain-containing protein.	0.903
D7T359_VITVI	D7TDE8_VITVI	D7T359	D7TDE8	Amino_oxidase domain-containing protein.	Amino_oxidase domain-containing protein.	0.903
D7T359_VITVI	D7TDQ5_VITVI	D7T359	D7TDQ5	Amino_oxidase domain-containing protein.	Amino_oxidase domain-containing protein.	0.916
D7T359_VITVI	D7TNQ7_VITVI	D7T359	D7TNQ7	Amino_oxidase domain-containing protein.	PABS domain-containing protein; Belongs to the spermidine/spermine synthase family.	0.937
D7T359_VITVI	E0CTZ8_VITVI	D7T359	E0CTZ8	Amino_oxidase domain-containing protein.	Amino_oxidase domain-containing protein.	0.915
D7T359_VITVI	F6HDK0_VITVI	D7T359	F6HDK0	Amino_oxidase domain-containing protein.	S-adenosylmethionine decarboxylase proenzyme.	0.587
D7T359_VITVI	F6HH53_VITVI	D7T359	F6HH53	Amino_oxidase domain-containing protein.	Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.408