33 items (Vitis vinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6I3W3_VITVI	F-box domain-containing protein. (397 aa)
	F6I4R4_VITVI	Uncharacterized protein. (587 aa)
	D7TWT5_VITVI	Uncharacterized protein. (612 aa)
	D7TWT2_VITVI	Uncharacterized protein. (638 aa)
	D7TJT3_VITVI	MACPF domain-containing protein. (1252 aa)
	D7TJG8_VITVI	Uncharacterized protein. (474 aa)
	D7TJC8_VITVI	MACPF domain-containing protein. (612 aa)
	D7T8J2_VITVI	MACPF domain-containing protein. (635 aa)
	D7T1Y5_VITVI	Uncharacterized protein. (587 aa)
	D7SXI0_VITVI	Cyclic nucleotide-binding domain-containing protein. (701 aa)
	D7STZ9_VITVI	Flavin-containing monooxygenase. (523 aa)
	D7SLY9_VITVI	VASt domain-containing protein. (639 aa)
	D7SJ80_VITVI	Uncharacterized protein. (634 aa)
	D7SJ23_VITVI	Uncharacterized protein. (469 aa)
	D7SJ22_VITVI	Uncharacterized protein. (469 aa)
	D7SJ21_VITVI	Uncharacterized protein. (470 aa)
	F6HZD8_VITVI	Uncharacterized protein. (536 aa)
	F6HYX3_VITVI	Calreticulin. (420 aa)
	F6HV26_VITVI	Uncharacterized protein. (1156 aa)
	F6HV24_VITVI	Uncharacterized protein. (602 aa)
	F6HTB1_VITVI	Uncharacterized protein. (191 aa)
	F6HH23_VITVI	Uncharacterized protein; Belongs to the disease resistance NB-LRR family. (975 aa)
	F6HGM4_VITVI	Flavin-containing monooxygenase. (522 aa)
	F6H932_VITVI	Uncharacterized protein. (1590 aa)
	F6H6V6_VITVI	Uncharacterized protein. (562 aa)
	F6H6V3_VITVI	Uncharacterized protein. (565 aa)
	F6H4E0_VITVI	Uncharacterized protein. (619 aa)
	F6H2E6_VITVI	Cyclic nucleotide-binding domain-containing protein. (667 aa)
	F6GX14_VITVI	Calreticulin. (433 aa)
	D7U9Q2_VITVI	F-box domain-containing protein. (357 aa)
	D7U990_VITVI	FBA_1 domain-containing protein. (243 aa)
	D7U4T5_VITVI	Uncharacterized protein. (482 aa)
	D7U277_VITVI	Uncharacterized protein. (324 aa)

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7SJ23_VITVI	F6H4E0_VITVI	D7SJ23	F6H4E0	Uncharacterized protein.	Uncharacterized protein.	0.665
D7SJ80_VITVI	D7TWT2_VITVI	D7SJ80	D7TWT2	Uncharacterized protein.	Uncharacterized protein.	0.901
D7SJ80_VITVI	D7TWT5_VITVI	D7SJ80	D7TWT5	Uncharacterized protein.	Uncharacterized protein.	0.902
D7TJG8_VITVI	F6H4E0_VITVI	D7TJG8	F6H4E0	Uncharacterized protein.	Uncharacterized protein.	0.485
D7TWT2_VITVI	D7SJ80_VITVI	D7TWT2	D7SJ80	Uncharacterized protein.	Uncharacterized protein.	0.901
D7TWT2_VITVI	D7TWT5_VITVI	D7TWT2	D7TWT5	Uncharacterized protein.	Uncharacterized protein.	0.900
D7TWT2_VITVI	F6HGM4_VITVI	D7TWT2	F6HGM4	Uncharacterized protein.	Flavin-containing monooxygenase.	0.432
D7TWT5_VITVI	D7SJ80_VITVI	D7TWT5	D7SJ80	Uncharacterized protein.	Uncharacterized protein.	0.902
D7TWT5_VITVI	D7TWT2_VITVI	D7TWT5	D7TWT2	Uncharacterized protein.	Uncharacterized protein.	0.900
F6GX14_VITVI	F6H932_VITVI	F6GX14	F6H932	Calreticulin.	Uncharacterized protein.	0.539
F6H4E0_VITVI	D7SJ23_VITVI	F6H4E0	D7SJ23	Uncharacterized protein.	Uncharacterized protein.	0.665
F6H4E0_VITVI	D7TJG8_VITVI	F6H4E0	D7TJG8	Uncharacterized protein.	Uncharacterized protein.	0.485
F6H4E0_VITVI	F6H6V3_VITVI	F6H4E0	F6H6V3	Uncharacterized protein.	Uncharacterized protein.	0.443
F6H4E0_VITVI	F6H6V6_VITVI	F6H4E0	F6H6V6	Uncharacterized protein.	Uncharacterized protein.	0.410
F6H4E0_VITVI	F6HV24_VITVI	F6H4E0	F6HV24	Uncharacterized protein.	Uncharacterized protein.	0.410
F6H4E0_VITVI	F6HV26_VITVI	F6H4E0	F6HV26	Uncharacterized protein.	Uncharacterized protein.	0.412
F6H4E0_VITVI	F6I4R4_VITVI	F6H4E0	F6I4R4	Uncharacterized protein.	Uncharacterized protein.	0.573
F6H6V3_VITVI	F6H4E0_VITVI	F6H6V3	F6H4E0	Uncharacterized protein.	Uncharacterized protein.	0.443
F6H6V6_VITVI	F6H4E0_VITVI	F6H6V6	F6H4E0	Uncharacterized protein.	Uncharacterized protein.	0.410
F6H932_VITVI	F6GX14_VITVI	F6H932	F6GX14	Uncharacterized protein.	Calreticulin.	0.539