(37 nodes) Seed maturation network (Vitis vinifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6H1V4_VITVI	Uncharacterized protein. (514 aa)
	VITISV_003135	Uncharacterized protein. (356 aa)
	VITISV_026442	BHLH domain-containing protein. (305 aa)
	D7SKC6_VITVI	Uncharacterized protein; Belongs to the cytochrome P450 family. (432 aa)
	D7SLF9_VITVI	E3 ubiquitin protein ligase. (879 aa)
	D7SLV1_VITVI	E3 ubiquitin protein ligase. (878 aa)
	D7SPQ8_VITVI	Uncharacterized protein. (254 aa)
	TIL	Lipocln_cytosolic_FA-bd_dom domain-containing protein. (129 aa)
	D7STY6_VITVI	G_PROTEIN_RECEP_F2_4 domain-containing protein. (319 aa)
	D7SUU6_VITVI	PEROXIDASE_4 domain-containing protein; Belongs to the peroxidase family. (330 aa)
	D7T0V0_VITVI	Uncharacterized protein. (60 aa)
	D7T3W4_VITVI	Uncharacterized protein. (398 aa)
	D7T3X1_VITVI	Uncharacterized protein. (238 aa)
	D7T3X2_VITVI	Uncharacterized protein. (276 aa)
	D7T3Y8_VITVI	Uncharacterized protein. (74 aa)
	D7TAG7_VITVI	GRAM domain-containing protein. (285 aa)
	D7TDY7_VITVI	FLZ-type domain-containing protein. (293 aa)
	D7TEN0_VITVI	Uncharacterized protein. (356 aa)
	D7TJR4_VITVI	Uncharacterized protein. (296 aa)
	D7U916_VITVI	Uncharacterized protein. (60 aa)
	E0CPJ0_VITVI	WD_REPEATS_REGION domain-containing protein. (382 aa)
	E0CTZ6_VITVI	Protein DETOXIFICATION; Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family. (504 aa)
	E0CUM8_VITVI	Pyruvate kinase; Belongs to the pyruvate kinase family. (576 aa)
	F6GWL2_VITVI	Uncharacterized protein. (1235 aa)
	F6GYC2_VITVI	Uncharacterized protein. (98 aa)
	F6GZW7_VITVI	SLEEPY1b. (184 aa)
	F6H2M6_VITVI	DOG1 domain-containing protein. (246 aa)
	F6H445_VITVI	GRAM domain-containing protein. (331 aa)
	F6H569_VITVI	Protein DETOXIFICATION; Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family. (506 aa)
	F6H9B7_VITVI	Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Lipocalin family. (334 aa)
	F6HBS7_VITVI	Uncharacterized protein. (315 aa)
	F6HCN4_VITVI	Uncharacterized protein. (104 aa)
	F6HDM6_VITVI	Uncharacterized protein. (1103 aa)
	F6HNB9_VITVI	AAA domain-containing protein. (687 aa)
	F6HXQ1_VITVI	Uncharacterized protein. (364 aa)
	F6I1P4_VITVI	GRAM domain-containing protein. (264 aa)
	SWEET15	Bidirectional sugar transporter SWEET15; Mediates both low-affinity uptake and efflux of sugar across the plasma membrane. (289 aa)

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7SKC6_VITVI	F6H2M6_VITVI	D7SKC6	F6H2M6	Uncharacterized protein; Belongs to the cytochrome P450 family.	DOG1 domain-containing protein.	0.486
D7SLF9_VITVI	D7SLV1_VITVI	D7SLF9	D7SLV1	E3 ubiquitin protein ligase.	E3 ubiquitin protein ligase.	0.652
D7SLV1_VITVI	D7SLF9_VITVI	D7SLV1	D7SLF9	E3 ubiquitin protein ligase.	E3 ubiquitin protein ligase.	0.652
D7SLV1_VITVI	F6H2M6_VITVI	D7SLV1	F6H2M6	E3 ubiquitin protein ligase.	DOG1 domain-containing protein.	0.483
D7SUU6_VITVI	E0CTZ6_VITVI	D7SUU6	E0CTZ6	PEROXIDASE_4 domain-containing protein; Belongs to the peroxidase family.	Protein DETOXIFICATION; Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family.	0.572
E0CTZ6_VITVI	D7SUU6_VITVI	E0CTZ6	D7SUU6	Protein DETOXIFICATION; Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family.	PEROXIDASE_4 domain-containing protein; Belongs to the peroxidase family.	0.572
F6H2M6_VITVI	D7SKC6_VITVI	F6H2M6	D7SKC6	DOG1 domain-containing protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.486
F6H2M6_VITVI	D7SLV1_VITVI	F6H2M6	D7SLV1	DOG1 domain-containing protein.	E3 ubiquitin protein ligase.	0.483
F6H9B7_VITVI	TIL	F6H9B7	D7SSP3	Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Lipocalin family.	Lipocln_cytosolic_FA-bd_dom domain-containing protein.	0.573
TIL	F6H9B7_VITVI	D7SSP3	F6H9B7	Lipocln_cytosolic_FA-bd_dom domain-containing protein.	Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Lipocalin family.	0.573