(61 nodes) Regulation of cellular ketone metabolic process network (Vitis vinifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D7SR01_VITVI	MACPF domain-containing protein. (623 aa)
	D7T204_VITVI	CP-type G domain-containing protein. (564 aa)
	D7T220_VITVI	Uncharacterized protein. (55 aa)
	D7T398_VITVI	Uncharacterized protein. (329 aa)
	D7TJC8_VITVI	MACPF domain-containing protein. (612 aa)
	D7TJT3_VITVI	MACPF domain-containing protein. (1252 aa)
	D7TNI7_VITVI	Uncharacterized protein. (111 aa)
	D7TQW1_VITVI	Uncharacterized protein. (313 aa)
	D7TST4_VITVI	Uncharacterized protein. (312 aa)
	D7TWZ7_VITVI	NTP_transferase domain-containing protein. (418 aa)
	D7TYP5_VITVI	Ribonuclease; Cytoprotective ribonuclease (RNase) required for resistance to abiotic stresses, acting as a positive regulator of mRNA decapping during stress. (1000 aa)
	D7U0Q3_VITVI	Aminotran_1_2 domain-containing protein. (394 aa)
	D7U277_VITVI	Uncharacterized protein. (324 aa)
	D7U2N2_VITVI	Uncharacterized protein; Belongs to the P(II) protein family. (198 aa)
	D7U343_VITVI	Uncharacterized protein. (419 aa)
	E0CVN3_VITVI	Uncharacterized protein. (554 aa)
	F6GSU8_VITVI	Uncharacterized protein. (410 aa)
	F6GWY4_VITVI	Protein phosphatase; Belongs to the PP2C family. (379 aa)
	F6GX78_VITVI	Uncharacterized protein. (280 aa)
	F6GXW5_VITVI	Uncharacterized protein. (339 aa)
	F6GZ32_VITVI	Uncharacterized protein. (561 aa)
	F6GZ33_VITVI	Uncharacterized protein. (331 aa)
	F6GZ34_VITVI	Uncharacterized protein. (70 aa)
	F6H0F2_VITVI	Protein phosphatase; Belongs to the PP2C family. (259 aa)
	F6H108_VITVI	WD_REPEATS_REGION domain-containing protein. (870 aa)
	F6H109_VITVI	Uncharacterized protein. (116 aa)
	F6H1G8_VITVI	Protein phosphatase; Belongs to the PP2C family. (519 aa)
	F6H395_VITVI	Homeobox domain-containing protein. (589 aa)
	F6H4E0_VITVI	Uncharacterized protein. (619 aa)
	F6H7U0_VITVI	Uncharacterized protein. (717 aa)
	F6H9B7_VITVI	Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Lipocalin family. (334 aa)
	F6HAF0_VITVI	Uncharacterized protein. (362 aa)
	F6HBQ0_VITVI	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family. (2937 aa)
	F6HF70_VITVI	Uncharacterized protein. (191 aa)
	F6HIX6_VITVI	Uncharacterized protein. (1187 aa)
	F6HKW3_VITVI	Protein phosphatase; Belongs to the PP2C family. (231 aa)
	F6HLN7_VITVI	Protein phosphatase; Belongs to the PP2C family. (246 aa)
	F6HLR5_VITVI	Uncharacterized protein. (805 aa)
	F6HLV5_VITVI	Uncharacterized protein. (1505 aa)
	F6HNE2_VITVI	Protein kinase domain-containing protein. (429 aa)
	F6HR43_VITVI	Protein kinase domain-containing protein. (167 aa)
	F6HR44_VITVI	Protein kinase domain-containing protein. (345 aa)
	F6HWS7_VITVI	J domain-containing protein. (208 aa)
	F6HYW1_VITVI	Uncharacterized protein. (307 aa)
	F6I4R4_VITVI	Uncharacterized protein. (587 aa)
	F6I6N7_VITVI	KIX_2 domain-containing protein. (120 aa)
	F6I7S3_VITVI	Uncharacterized protein. (77 aa)
	D7SVE1_VITVI	Ribonuclease; Cytoprotective ribonuclease (RNase) required for resistance to abiotic stresses, acting as a positive regulator of mRNA decapping during stress. (991 aa)
	D7SUH9_VITVI	Aminotran_1_2 domain-containing protein. (394 aa)
	D7STF3_VITVI	Protein phosphatase; Belongs to the PP2C family. (772 aa)
	D7SYH9_VITVI	Uncharacterized protein. (301 aa)
	D7SQ62_VITVI	Uncharacterized protein. (628 aa)
	D7SJ23_VITVI	Uncharacterized protein. (469 aa)
	D7SJ22_VITVI	Uncharacterized protein. (469 aa)
	D7SJ21_VITVI	Uncharacterized protein. (470 aa)
	D7SI36_VITVI	Protein phosphatase; Belongs to the PP2C family. (229 aa)
	D7SHY4_VITVI	NTP_transferase domain-containing protein. (415 aa)
	D7FBB2_VITVI	Uncharacterized protein. (79 aa)
	VITISV_026442	BHLH domain-containing protein. (305 aa)
	VITISV_024996	J domain-containing protein. (216 aa)
	D7SWG0_VITVI	Uncharacterized protein. (780 aa)

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7SHY4_VITVI	D7TWZ7_VITVI	D7SHY4	D7TWZ7	NTP_transferase domain-containing protein.	NTP_transferase domain-containing protein.	0.900
D7SJ23_VITVI	F6H4E0_VITVI	D7SJ23	F6H4E0	Uncharacterized protein.	Uncharacterized protein.	0.665
D7SUH9_VITVI	D7U0Q3_VITVI	D7SUH9	D7U0Q3	Aminotran_1_2 domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.901
D7SWG0_VITVI	F6HYW1_VITVI	D7SWG0	F6HYW1	Uncharacterized protein.	Uncharacterized protein.	0.614
D7SWG0_VITVI	F6I6N7_VITVI	D7SWG0	F6I6N7	Uncharacterized protein.	KIX_2 domain-containing protein.	0.612
D7TQW1_VITVI	F6I6N7_VITVI	D7TQW1	F6I6N7	Uncharacterized protein.	KIX_2 domain-containing protein.	0.606
D7TWZ7_VITVI	D7SHY4_VITVI	D7TWZ7	D7SHY4	NTP_transferase domain-containing protein.	NTP_transferase domain-containing protein.	0.900
D7U0Q3_VITVI	D7SUH9_VITVI	D7U0Q3	D7SUH9	Aminotran_1_2 domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.901
D7U343_VITVI	F6HLV5_VITVI	D7U343	F6HLV5	Uncharacterized protein.	Uncharacterized protein.	0.903
F6H4E0_VITVI	D7SJ23_VITVI	F6H4E0	D7SJ23	Uncharacterized protein.	Uncharacterized protein.	0.665
F6H4E0_VITVI	F6I4R4_VITVI	F6H4E0	F6I4R4	Uncharacterized protein.	Uncharacterized protein.	0.573
F6HIX6_VITVI	F6I6N7_VITVI	F6HIX6	F6I6N7	Uncharacterized protein.	KIX_2 domain-containing protein.	0.788
F6HLV5_VITVI	D7U343_VITVI	F6HLV5	D7U343	Uncharacterized protein.	Uncharacterized protein.	0.903
F6HYW1_VITVI	D7SWG0_VITVI	F6HYW1	D7SWG0	Uncharacterized protein.	Uncharacterized protein.	0.614
F6HYW1_VITVI	F6I6N7_VITVI	F6HYW1	F6I6N7	Uncharacterized protein.	KIX_2 domain-containing protein.	0.681
F6I4R4_VITVI	F6H4E0_VITVI	F6I4R4	F6H4E0	Uncharacterized protein.	Uncharacterized protein.	0.573
F6I6N7_VITVI	D7SWG0_VITVI	F6I6N7	D7SWG0	KIX_2 domain-containing protein.	Uncharacterized protein.	0.612
F6I6N7_VITVI	D7TQW1_VITVI	F6I6N7	D7TQW1	KIX_2 domain-containing protein.	Uncharacterized protein.	0.606
F6I6N7_VITVI	F6HIX6_VITVI	F6I6N7	F6HIX6	KIX_2 domain-containing protein.	Uncharacterized protein.	0.788
F6I6N7_VITVI	F6HYW1_VITVI	F6I6N7	F6HYW1	KIX_2 domain-containing protein.	Uncharacterized protein.	0.681