(23 nodes) Carotenoid biosynthetic process network (Vitis vinifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6H042_VITVI	Uncharacterized protein; Belongs to the FPP/GGPP synthase family. (371 aa)
	F6GWZ4_VITVI	Uncharacterized protein; Belongs to the FPP/GGPP synthase family. (368 aa)
	E0CNV3_VITVI	Uncharacterized protein. (558 aa)
	D7UE66_VITVI	Ubiquinol oxidase; Belongs to the alternative oxidase family. (294 aa)
	D7U8P2_VITVI	Amino_oxidase domain-containing protein. (463 aa)
	LBCY1	Uncharacterized protein. (497 aa)
	LUT1	Uncharacterized protein; Belongs to the cytochrome P450 family. (546 aa)
	LBCY2	Uncharacterized protein. (508 aa)
	F6I7J6_VITVI	Uncharacterized protein. (279 aa)
	F6H580_VITVI	Uncharacterized protein. (396 aa)
	LECY1	Uncharacterized protein. (448 aa)
	F6H6C8_VITVI	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family. (306 aa)
	F6HE60_VITVI	Uncharacterized protein; Belongs to the FPP/GGPP synthase family. (276 aa)
	PSY1	Uncharacterized protein. (437 aa)
	ZEP	Zeaxanthin epoxidase, chloroplastic; Converts zeaxanthin into antheraxanthin and subsequently violaxanthin. (658 aa)
	D7STP8_VITVI	Uncharacterized protein; Belongs to the cytochrome P450 family. (137 aa)
	D7SPU4_VITVI	Uncharacterized protein; Belongs to the cytochrome P450 family. (638 aa)
	F6H3M6_VITVI	Uncharacterized protein; Belongs to the cytochrome P450 family. (534 aa)
	D7TUE2_VITVI	Uncharacterized protein; Belongs to the cytochrome P450 family. (572 aa)
	ZDS1	Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'. (552 aa)
	BCH1	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family. (299 aa)
	D7TYT8_VITVI	Uncharacterized protein. (323 aa)
	PDS1	Amino_oxidase domain-containing protein. (582 aa)

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BCH1	D7SPU4_VITVI	D7TV52	D7SPU4	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.922
BCH1	F6H580_VITVI	D7TV52	F6H580	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	Uncharacterized protein.	0.506
BCH1	F6H6C8_VITVI	D7TV52	F6H6C8	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	0.902
BCH1	LBCY1	D7TV52	F6HHE0	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	Uncharacterized protein.	0.691
BCH1	LBCY2	D7TV52	F6HLP6	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	Uncharacterized protein.	0.977
BCH1	LECY1	D7TV52	D7TCM3	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	Uncharacterized protein.	0.798
BCH1	LUT1	D7TV52	F6HKE4	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.961
BCH1	PDS1	D7TV52	D7TZI5	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	Amino_oxidase domain-containing protein.	0.799
BCH1	PSY1	D7TV52	F6HFX4	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	Uncharacterized protein.	0.551
BCH1	ZDS1	D7TV52	D7TUM8	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.	0.772
BCH1	ZEP	D7TV52	D7SVX6	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	Zeaxanthin epoxidase, chloroplastic; Converts zeaxanthin into antheraxanthin and subsequently violaxanthin.	0.972
D7SPU4_VITVI	BCH1	D7SPU4	D7TV52	Uncharacterized protein; Belongs to the cytochrome P450 family.	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	0.922
D7SPU4_VITVI	D7U8P2_VITVI	D7SPU4	D7U8P2	Uncharacterized protein; Belongs to the cytochrome P450 family.	Amino_oxidase domain-containing protein.	0.703
D7SPU4_VITVI	F6H580_VITVI	D7SPU4	F6H580	Uncharacterized protein; Belongs to the cytochrome P450 family.	Uncharacterized protein.	0.711
D7SPU4_VITVI	F6H6C8_VITVI	D7SPU4	F6H6C8	Uncharacterized protein; Belongs to the cytochrome P450 family.	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	0.942
D7SPU4_VITVI	LBCY1	D7SPU4	F6HHE0	Uncharacterized protein; Belongs to the cytochrome P450 family.	Uncharacterized protein.	0.690
D7SPU4_VITVI	LBCY2	D7SPU4	F6HLP6	Uncharacterized protein; Belongs to the cytochrome P450 family.	Uncharacterized protein.	0.974
D7SPU4_VITVI	LECY1	D7SPU4	D7TCM3	Uncharacterized protein; Belongs to the cytochrome P450 family.	Uncharacterized protein.	0.782
D7SPU4_VITVI	LUT1	D7SPU4	F6HKE4	Uncharacterized protein; Belongs to the cytochrome P450 family.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.906
D7SPU4_VITVI	PDS1	D7SPU4	D7TZI5	Uncharacterized protein; Belongs to the cytochrome P450 family.	Amino_oxidase domain-containing protein.	0.832