(14 nodes) Carotene metabolic process network (Vitis vinifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CCD4b	Uncharacterized protein. (589 aa)
	LECY1	Uncharacterized protein. (448 aa)
	PDS1	Amino_oxidase domain-containing protein. (582 aa)
	CCD1	Carotenoid cleavage dioxygenase 1. (546 aa)
	D7SLU7_VITVI	Uncharacterized protein. (610 aa)
	D7U9M9_VITVI	NnrU domain-containing protein. (307 aa)
	F6H3D5_VITVI	Uncharacterized protein. (546 aa)
	F6HB65_VITVI	Uncharacterized protein. (510 aa)
	F6HS58_VITVI	Uncharacterized protein. (575 aa)
	NCED1	Uncharacterized protein. (609 aa)
	LBCY1	Uncharacterized protein. (497 aa)
	NCED2	Uncharacterized protein. (605 aa)
	LBCY2	Uncharacterized protein. (508 aa)
	CCD4a	Uncharacterized protein. (599 aa)

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCD1	D7U9M9_VITVI	D7T313	D7U9M9	Carotenoid cleavage dioxygenase 1.	NnrU domain-containing protein.	0.454
CCD1	LBCY2	D7T313	F6HLP6	Carotenoid cleavage dioxygenase 1.	Uncharacterized protein.	0.475
CCD1	LECY1	D7T313	D7TCM3	Carotenoid cleavage dioxygenase 1.	Uncharacterized protein.	0.481
CCD1	PDS1	D7T313	D7TZI5	Carotenoid cleavage dioxygenase 1.	Amino_oxidase domain-containing protein.	0.678
CCD4a	D7U9M9_VITVI	F6HJ16	D7U9M9	Uncharacterized protein.	NnrU domain-containing protein.	0.623
CCD4a	LBCY1	F6HJ16	F6HHE0	Uncharacterized protein.	Uncharacterized protein.	0.601
CCD4a	LBCY2	F6HJ16	F6HLP6	Uncharacterized protein.	Uncharacterized protein.	0.743
CCD4a	LECY1	F6HJ16	D7TCM3	Uncharacterized protein.	Uncharacterized protein.	0.626
CCD4a	PDS1	F6HJ16	D7TZI5	Uncharacterized protein.	Amino_oxidase domain-containing protein.	0.656
CCD4b	D7U9M9_VITVI	F6HJ14	D7U9M9	Uncharacterized protein.	NnrU domain-containing protein.	0.447
CCD4b	LBCY1	F6HJ14	F6HHE0	Uncharacterized protein.	Uncharacterized protein.	0.549
CCD4b	LBCY2	F6HJ14	F6HLP6	Uncharacterized protein.	Uncharacterized protein.	0.655
CCD4b	LECY1	F6HJ14	D7TCM3	Uncharacterized protein.	Uncharacterized protein.	0.609
CCD4b	PDS1	F6HJ14	D7TZI5	Uncharacterized protein.	Amino_oxidase domain-containing protein.	0.552
D7SLU7_VITVI	D7U9M9_VITVI	D7SLU7	D7U9M9	Uncharacterized protein.	NnrU domain-containing protein.	0.549
D7SLU7_VITVI	F6H3D5_VITVI	D7SLU7	F6H3D5	Uncharacterized protein.	Uncharacterized protein.	0.974
D7SLU7_VITVI	LBCY1	D7SLU7	F6HHE0	Uncharacterized protein.	Uncharacterized protein.	0.437
D7SLU7_VITVI	LBCY2	D7SLU7	F6HLP6	Uncharacterized protein.	Uncharacterized protein.	0.557
D7SLU7_VITVI	LECY1	D7SLU7	D7TCM3	Uncharacterized protein.	Uncharacterized protein.	0.568
D7SLU7_VITVI	PDS1	D7SLU7	D7TZI5	Uncharacterized protein.	Amino_oxidase domain-containing protein.	0.723