(82 nodes) Protein deubiquitination network (Vitis vinifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

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protein homology

Your Input:
	F6HX95_VITVI	MPN domain-containing protein. (377 aa)
	VITISV_027729	Ubiquitin carboxyl-terminal hydrolase. (334 aa)
	VITISV_003549	Uncharacterized protein. (1225 aa)
	VITISV_019064	OTU domain-containing protein. (208 aa)
	VITISV_030811	Uncharacterized protein. (86 aa)
	VITISV_012992	MPN domain-containing protein. (309 aa)
	D7SJ09_VITVI	MPN domain-containing protein. (506 aa)
	D7SJ13_VITVI	Uncharacterized protein. (51 aa)
	D7SK18_VITVI	Josephin domain-containing protein. (184 aa)
	D7SL20_VITVI	OTU domain-containing protein. (354 aa)
	D7SMT1_VITVI	Uncharacterized protein. (87 aa)
	D7SNT0_VITVI	X8 domain-containing protein. (220 aa)
	D7SQ20_VITVI	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family. (553 aa)
	D7SQZ5_VITVI	PMD domain-containing protein. (277 aa)
	D7SR87_VITVI	DUF862 domain-containing protein. (138 aa)
	D7SRB3_VITVI	DUF4205 domain-containing protein. (616 aa)
	D7SVD8_VITVI	OTU domain-containing protein. (262 aa)
	D7SVQ4_VITVI	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] (127 aa)
	D7SW90_VITVI	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family. (532 aa)
	D7SY60_VITVI	MPN domain-containing protein. (516 aa)
	D7T1M3_VITVI	Uncharacterized protein; Belongs to the peptidase C19 family. (1116 aa)
	D7T3A6_VITVI	Uncharacterized protein; Belongs to the peptidase C19 family. (1115 aa)
	D7T5I6_VITVI	Ubiquitin carboxyl-terminal hydrolase. (236 aa)
	D7TAQ9_VITVI	OTU domain-containing protein. (155 aa)
	D7TDF2_VITVI	MPN domain-containing protein. (275 aa)
	D7TFI5_VITVI	Ubiquitin thioesterase. (305 aa)
	D7TGH8_VITVI	USP domain-containing protein. (77 aa)
	D7THC0_VITVI	OTU domain-containing protein. (226 aa)
	D7THC1_VITVI	Josephin domain-containing protein. (272 aa)
	D7TPY1_VITVI	DUF862 domain-containing protein. (335 aa)
	D7TR00_VITVI	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family. (635 aa)
	D7TVT0_VITVI	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family. (944 aa)
	D7TX05_VITVI	Uncharacterized protein. (1213 aa)
	D7TZG1_VITVI	DUF862 domain-containing protein. (229 aa)
	D7U032_VITVI	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family. (479 aa)
	D7U6B4_VITVI	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family. (955 aa)
	D7U8M2_VITVI	Uncharacterized protein; Belongs to the peptidase C19 family. (1116 aa)
	D7UBV6_VITVI	OTU domain-containing protein. (317 aa)
	D7UDX1_VITVI	Uncharacterized protein. (123 aa)
	E0CQ11_VITVI	DUF862 domain-containing protein. (247 aa)
	E0CSU7_VITVI	USP domain-containing protein; Belongs to the peptidase C19 family. (132 aa)
	E0CUW3_VITVI	DUF862 domain-containing protein. (243 aa)
	F6GTB6_VITVI	USP domain-containing protein. (1603 aa)
	F6GUM6_VITVI	SAGA-associated factor 11. (168 aa)
	F6GWF8_VITVI	USP domain-containing protein. (66 aa)
	F6GZ50_VITVI	Uncharacterized protein. (903 aa)
	F6H2F6_VITVI	UBA domain-containing protein. (157 aa)
	F6H2F7_VITVI	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family. (812 aa)
	F6H2K2_VITVI	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family. (894 aa)
	F6H2X7_VITVI	Uncharacterized protein; Belongs to the peptidase C19 family. (1094 aa)
	F6H350_VITVI	Ubiquitinyl hydrolase 1. (553 aa)
	F6H3J6_VITVI	DUF862 domain-containing protein. (226 aa)
	F6H4H8_VITVI	OTU domain-containing protein. (361 aa)
	F6H9H5_VITVI	Uncharacterized protein. (864 aa)
	F6HAA6_VITVI	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family. (882 aa)
	F6HCG7_VITVI	USP domain-containing protein; Belongs to the peptidase C19 family. (283 aa)
	F6HCG8_VITVI	Ubiquitinyl hydrolase 1. (352 aa)
	F6HCQ1_VITVI	Uncharacterized protein. (51 aa)
	F6HHD7_VITVI	OTU domain-containing protein. (528 aa)
	F6HL65_VITVI	OTU domain-containing protein. (223 aa)
	F6HNE1_VITVI	OTU domain-containing protein. (346 aa)
	F6HQ10_VITVI	OTU domain-containing protein. (331 aa)
	F6HR42_VITVI	OTU domain-containing protein. (319 aa)
	F6HRG0_VITVI	Uncharacterized protein. (997 aa)
	F6HT89_VITVI	USP domain-containing protein; Belongs to the peptidase C19 family. (525 aa)
	F6HTI8_VITVI	UBA domain-containing protein. (157 aa)
	F6HTI9_VITVI	Uncharacterized protein. (46 aa)
	F6HTW0_VITVI	WD_REPEATS_REGION domain-containing protein. (802 aa)
	F6HUI9_VITVI	MINDY_DUB domain-containing protein. (695 aa)
	F6HV75_VITVI	USP domain-containing protein. (1090 aa)
	F6HV76_VITVI	C2H2-type domain-containing protein. (1041 aa)
	F6HWB7_VITVI	Uncharacterized protein. (740 aa)
	F6HWM1_VITVI	USP domain-containing protein; Belongs to the peptidase C19 family. (369 aa)
	F6I7S5_VITVI	USP domain-containing protein. (197 aa)
	F6I6S3_VITVI	MATH domain-containing protein. (88 aa)
	F6I3K3_VITVI	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family. (739 aa)
	F6I3K2_VITVI	Uncharacterized protein. (117 aa)
	F6I3D5_VITVI	UCH domain-containing protein. (48 aa)
	F6I3D4_VITVI	USP domain-containing protein; Belongs to the peptidase C19 family. (358 aa)
	F6I1Y1_VITVI	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family. (997 aa)
	F6HXX3_VITVI	OTU domain-containing protein. (257 aa)
	F6HX94_VITVI	JAB_MPN domain-containing protein. (92 aa)

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7SJ09_VITVI	D7SK18_VITVI	D7SJ09	D7SK18	MPN domain-containing protein.	Josephin domain-containing protein.	0.404
D7SJ09_VITVI	D7SW90_VITVI	D7SJ09	D7SW90	MPN domain-containing protein.	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	0.452
D7SJ09_VITVI	D7SY60_VITVI	D7SJ09	D7SY60	MPN domain-containing protein.	MPN domain-containing protein.	0.903
D7SJ09_VITVI	D7TDF2_VITVI	D7SJ09	D7TDF2	MPN domain-containing protein.	MPN domain-containing protein.	0.903
D7SJ09_VITVI	D7U032_VITVI	D7SJ09	D7U032	MPN domain-containing protein.	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	0.677
D7SJ09_VITVI	VITISV_027729	D7SJ09	A5AU65	MPN domain-containing protein.	Ubiquitin carboxyl-terminal hydrolase.	0.786
D7SJ13_VITVI	D7SK18_VITVI	D7SJ13	D7SK18	Uncharacterized protein.	Josephin domain-containing protein.	0.407
D7SJ13_VITVI	D7SW90_VITVI	D7SJ13	D7SW90	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	0.452
D7SJ13_VITVI	D7U032_VITVI	D7SJ13	D7U032	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	0.677
D7SJ13_VITVI	VITISV_027729	D7SJ13	A5AU65	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.786
D7SK18_VITVI	D7SJ09_VITVI	D7SK18	D7SJ09	Josephin domain-containing protein.	MPN domain-containing protein.	0.404
D7SK18_VITVI	D7SJ13_VITVI	D7SK18	D7SJ13	Josephin domain-containing protein.	Uncharacterized protein.	0.407
D7SK18_VITVI	D7SW90_VITVI	D7SK18	D7SW90	Josephin domain-containing protein.	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	0.584
D7SK18_VITVI	D7SY60_VITVI	D7SK18	D7SY60	Josephin domain-containing protein.	MPN domain-containing protein.	0.492
D7SK18_VITVI	D7TFI5_VITVI	D7SK18	D7TFI5	Josephin domain-containing protein.	Ubiquitin thioesterase.	0.507
D7SK18_VITVI	D7THC1_VITVI	D7SK18	D7THC1	Josephin domain-containing protein.	Josephin domain-containing protein.	0.634
D7SK18_VITVI	D7U032_VITVI	D7SK18	D7U032	Josephin domain-containing protein.	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	0.406
D7SK18_VITVI	F6H4H8_VITVI	D7SK18	F6H4H8	Josephin domain-containing protein.	OTU domain-containing protein.	0.483
D7SK18_VITVI	F6HHD7_VITVI	D7SK18	F6HHD7	Josephin domain-containing protein.	OTU domain-containing protein.	0.455
D7SK18_VITVI	F6HQ10_VITVI	D7SK18	F6HQ10	Josephin domain-containing protein.	OTU domain-containing protein.	0.486