(22 nodes) Ammonia-lyase activity network (Vitis vinifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6HEB8_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	F6I2I6_VITVI	Uncharacterized protein. (308 aa)
	PAL1	Phenylalanine ammonia-lyase. (717 aa)
	D7TCI7_VITVI	Uncharacterized protein. (355 aa)
	D7TCJ8_VITVI	Phenylalanine ammonia-lyase. (665 aa)
	D7TCK0_VITVI	Uncharacterized protein. (174 aa)
	D7TIY0_VITVI	Uncharacterized protein. (180 aa)
	D7TIY1_VITVI	Threonine dehydratase. (606 aa)
	D7TW10_VITVI	PALP domain-containing protein. (333 aa)
	F6HEB0_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	F6HEB1_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	F6HEB2_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	F6HEB3_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	PAL	Phenylalanine ammonia-lyase. (710 aa)
	F6HS12_VITVI	Phenylalanine ammonia-lyase. (469 aa)
	PAL-2	Phenylalanine ammonia-lyase. (710 aa)
	PAL-3	Phenylalanine ammonia-lyase. (734 aa)
	F6HEC1_VITVI	Uncharacterized protein. (128 aa)
	F6HEC2_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	F6HGU6_VITVI	Phenylalanine ammonia-lyase. (895 aa)
	PAL7	Phenylalanine ammonia-lyase. (723 aa)
	PAL2	Phenylalanine ammonia-lyase. (710 aa)

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7TCK0_VITVI	F6HEC1_VITVI	D7TCK0	F6HEC1	Uncharacterized protein.	Uncharacterized protein.	0.722
D7TCK0_VITVI	F6HS12_VITVI	D7TCK0	F6HS12	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.563
D7TIY1_VITVI	D7TW10_VITVI	D7TIY1	D7TW10	Threonine dehydratase.	PALP domain-containing protein.	0.930
D7TW10_VITVI	D7TIY1_VITVI	D7TW10	D7TIY1	PALP domain-containing protein.	Threonine dehydratase.	0.930
F6HEB2_VITVI	F6HEC2_VITVI	F6HEB2	F6HEC2	Phenylalanine ammonia-lyase.	Phenylalanine ammonia-lyase.	0.425
F6HEC1_VITVI	D7TCK0_VITVI	F6HEC1	D7TCK0	Uncharacterized protein.	Uncharacterized protein.	0.722
F6HEC1_VITVI	F6I2I6_VITVI	F6HEC1	F6I2I6	Uncharacterized protein.	Uncharacterized protein.	0.824
F6HEC2_VITVI	F6HEB2_VITVI	F6HEC2	F6HEB2	Phenylalanine ammonia-lyase.	Phenylalanine ammonia-lyase.	0.425
F6HEC2_VITVI	PAL-2	F6HEC2	F6HEB9	Phenylalanine ammonia-lyase.	Phenylalanine ammonia-lyase.	0.660
F6HS12_VITVI	D7TCK0_VITVI	F6HS12	D7TCK0	Phenylalanine ammonia-lyase.	Uncharacterized protein.	0.563
F6I2I6_VITVI	F6HEC1_VITVI	F6I2I6	F6HEC1	Uncharacterized protein.	Uncharacterized protein.	0.824
PAL-2	F6HEC2_VITVI	F6HEB9	F6HEC2	Phenylalanine ammonia-lyase.	Phenylalanine ammonia-lyase.	0.660