(10 nodes) U2 snRNA binding network (Vitis vinifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6I1R2_VITVI	CPSF_A domain-containing protein. (130 aa)
	F6I3E9_VITVI	Uncharacterized protein. (146 aa)
	F6I5D6_VITVI	Uncharacterized protein. (109 aa)
	D7SMC6_VITVI	Coilin_N domain-containing protein. (652 aa)
	D7TFN0_VITVI	Uncharacterized protein. (287 aa)
	D7TI88_VITVI	CPSF_A domain-containing protein. (1363 aa)
	D7U143_VITVI	MPN domain-containing protein. (2347 aa)
	F6HK90_VITVI	Uncharacterized protein. (39 aa)
	F6HRR6_VITVI	CPSF_A domain-containing protein. (1214 aa)
	F6I1R1_VITVI	Uncharacterized protein. (145 aa)

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7TFN0_VITVI	D7TI88_VITVI	D7TFN0	D7TI88	Uncharacterized protein.	CPSF_A domain-containing protein.	0.888
D7TFN0_VITVI	D7U143_VITVI	D7TFN0	D7U143	Uncharacterized protein.	MPN domain-containing protein.	0.959
D7TFN0_VITVI	F6HK90_VITVI	D7TFN0	F6HK90	Uncharacterized protein.	Uncharacterized protein.	0.888
D7TFN0_VITVI	F6HRR6_VITVI	D7TFN0	F6HRR6	Uncharacterized protein.	CPSF_A domain-containing protein.	0.888
D7TFN0_VITVI	F6I1R1_VITVI	D7TFN0	F6I1R1	Uncharacterized protein.	Uncharacterized protein.	0.888
D7TFN0_VITVI	F6I1R2_VITVI	D7TFN0	F6I1R2	Uncharacterized protein.	CPSF_A domain-containing protein.	0.888
D7TFN0_VITVI	F6I3E9_VITVI	D7TFN0	F6I3E9	Uncharacterized protein.	Uncharacterized protein.	0.888
D7TFN0_VITVI	F6I5D6_VITVI	D7TFN0	F6I5D6	Uncharacterized protein.	Uncharacterized protein.	0.888
D7TI88_VITVI	D7TFN0_VITVI	D7TI88	D7TFN0	CPSF_A domain-containing protein.	Uncharacterized protein.	0.888
D7TI88_VITVI	D7U143_VITVI	D7TI88	D7U143	CPSF_A domain-containing protein.	MPN domain-containing protein.	0.869
D7TI88_VITVI	F6HRR6_VITVI	D7TI88	F6HRR6	CPSF_A domain-containing protein.	CPSF_A domain-containing protein.	0.900
D7TI88_VITVI	F6I1R2_VITVI	D7TI88	F6I1R2	CPSF_A domain-containing protein.	CPSF_A domain-containing protein.	0.540
D7TI88_VITVI	F6I3E9_VITVI	D7TI88	F6I3E9	CPSF_A domain-containing protein.	Uncharacterized protein.	0.540
D7TI88_VITVI	F6I5D6_VITVI	D7TI88	F6I5D6	CPSF_A domain-containing protein.	Uncharacterized protein.	0.569
D7U143_VITVI	D7TFN0_VITVI	D7U143	D7TFN0	MPN domain-containing protein.	Uncharacterized protein.	0.959
D7U143_VITVI	D7TI88_VITVI	D7U143	D7TI88	MPN domain-containing protein.	CPSF_A domain-containing protein.	0.869
D7U143_VITVI	F6HK90_VITVI	D7U143	F6HK90	MPN domain-containing protein.	Uncharacterized protein.	0.869
D7U143_VITVI	F6HRR6_VITVI	D7U143	F6HRR6	MPN domain-containing protein.	CPSF_A domain-containing protein.	0.869
D7U143_VITVI	F6I1R1_VITVI	D7U143	F6I1R1	MPN domain-containing protein.	Uncharacterized protein.	0.869
D7U143_VITVI	F6I1R2_VITVI	D7U143	F6I1R2	MPN domain-containing protein.	CPSF_A domain-containing protein.	0.869