(16 nodes) Protein retention in Golgi apparatus network (Vitis vinifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6I5I5_VITVI	Chorein_N domain-containing protein. (178 aa)
	F6I5I4_VITVI	Uncharacterized protein. (114 aa)
	F6I5I3_VITVI	VPS13 domain-containing protein. (89 aa)
	F6I5I0_VITVI	Uncharacterized protein. (2497 aa)
	F6HTE6_VITVI	Uncharacterized protein. (1692 aa)
	F6HTE5_VITVI	Uncharacterized protein. (549 aa)
	F6HTE4_VITVI	Uncharacterized protein. (356 aa)
	F6HTE3_VITVI	PH domain-containing protein. (1608 aa)
	F6HE13_VITVI	C2 domain-containing protein. (4262 aa)
	F6H8V7_VITVI	VPS13 domain-containing protein. (134 aa)
	F6H3M2_VITVI	Uncharacterized protein. (125 aa)
	F6H3M1_VITVI	Uncharacterized protein. (120 aa)
	D7UE17_VITVI	Uncharacterized protein. (140 aa)
	D7T1Z1_VITVI	Embryo yellow protein. (838 aa)
	D7ST61_VITVI	Uncharacterized protein. (105 aa)
	F6I7D8_VITVI	Uncharacterized protein. (2168 aa)

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7T1Z1_VITVI	F6H3M1_VITVI	D7T1Z1	F6H3M1	Embryo yellow protein.	Uncharacterized protein.	0.540
D7T1Z1_VITVI	F6H3M2_VITVI	D7T1Z1	F6H3M2	Embryo yellow protein.	Uncharacterized protein.	0.540
F6H3M1_VITVI	D7T1Z1_VITVI	F6H3M1	D7T1Z1	Uncharacterized protein.	Embryo yellow protein.	0.540
F6H3M1_VITVI	F6H3M2_VITVI	F6H3M1	F6H3M2	Uncharacterized protein.	Uncharacterized protein.	0.540
F6H3M2_VITVI	D7T1Z1_VITVI	F6H3M2	D7T1Z1	Uncharacterized protein.	Embryo yellow protein.	0.540
F6H3M2_VITVI	F6H3M1_VITVI	F6H3M2	F6H3M1	Uncharacterized protein.	Uncharacterized protein.	0.540
F6HTE3_VITVI	F6HTE4_VITVI	F6HTE3	F6HTE4	PH domain-containing protein.	Uncharacterized protein.	0.943
F6HTE3_VITVI	F6HTE5_VITVI	F6HTE3	F6HTE5	PH domain-containing protein.	Uncharacterized protein.	0.953
F6HTE3_VITVI	F6HTE6_VITVI	F6HTE3	F6HTE6	PH domain-containing protein.	Uncharacterized protein.	0.943
F6HTE3_VITVI	F6I5I0_VITVI	F6HTE3	F6I5I0	PH domain-containing protein.	Uncharacterized protein.	0.402
F6HTE4_VITVI	F6HTE3_VITVI	F6HTE4	F6HTE3	Uncharacterized protein.	PH domain-containing protein.	0.943
F6HTE4_VITVI	F6HTE5_VITVI	F6HTE4	F6HTE5	Uncharacterized protein.	Uncharacterized protein.	0.921
F6HTE4_VITVI	F6HTE6_VITVI	F6HTE4	F6HTE6	Uncharacterized protein.	Uncharacterized protein.	0.899
F6HTE5_VITVI	F6HTE3_VITVI	F6HTE5	F6HTE3	Uncharacterized protein.	PH domain-containing protein.	0.953
F6HTE5_VITVI	F6HTE4_VITVI	F6HTE5	F6HTE4	Uncharacterized protein.	Uncharacterized protein.	0.921
F6HTE5_VITVI	F6HTE6_VITVI	F6HTE5	F6HTE6	Uncharacterized protein.	Uncharacterized protein.	0.907
F6HTE6_VITVI	F6HTE3_VITVI	F6HTE6	F6HTE3	Uncharacterized protein.	PH domain-containing protein.	0.943
F6HTE6_VITVI	F6HTE4_VITVI	F6HTE6	F6HTE4	Uncharacterized protein.	Uncharacterized protein.	0.899
F6HTE6_VITVI	F6HTE5_VITVI	F6HTE6	F6HTE5	Uncharacterized protein.	Uncharacterized protein.	0.907
F6I5I0_VITVI	F6HTE3_VITVI	F6I5I0	F6HTE3	Uncharacterized protein.	PH domain-containing protein.	0.402