15 items (Vitis vinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D7SWF2_VITVI	Prenylcys_lyase domain-containing protein. (502 aa)
	D7T1S7_VITVI	HMG_CoA_synt_N domain-containing protein. (136 aa)
	D7TMZ4_VITVI	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. (461 aa)
	D7TMZ6_VITVI	Uncharacterized protein. (117 aa)
	D7TTP0_VITVI	Uncharacterized protein. (508 aa)
	D7TW88_VITVI	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. (464 aa)
	D7U5I9_VITVI	Uncharacterized protein. (413 aa)
	D7UAM1_VITVI	Uncharacterized protein; Belongs to the FPP/GGPP synthase family. (341 aa)
	F6GTT8_VITVI	Uncharacterized protein. (238 aa)
	F6GTT9_VITVI	HMG_CoA_synt_C domain-containing protein. (115 aa)
	F6GWZ4_VITVI	Uncharacterized protein; Belongs to the FPP/GGPP synthase family. (368 aa)
	F6H042_VITVI	Uncharacterized protein; Belongs to the FPP/GGPP synthase family. (371 aa)
	F6H606_VITVI	Uncharacterized protein. (138 aa)
	F6HE60_VITVI	Uncharacterized protein; Belongs to the FPP/GGPP synthase family. (276 aa)
	F6HN03_VITVI	Uncharacterized protein. (224 aa)

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7T1S7_VITVI	D7U5I9_VITVI	D7T1S7	D7U5I9	HMG_CoA_synt_N domain-containing protein.	Uncharacterized protein.	0.575
D7T1S7_VITVI	D7UAM1_VITVI	D7T1S7	D7UAM1	HMG_CoA_synt_N domain-containing protein.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.430
D7TMZ4_VITVI	D7TTP0_VITVI	D7TMZ4	D7TTP0	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	Uncharacterized protein.	0.655
D7TMZ4_VITVI	D7U5I9_VITVI	D7TMZ4	D7U5I9	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	Uncharacterized protein.	0.575
D7TMZ4_VITVI	D7UAM1_VITVI	D7TMZ4	D7UAM1	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.768
D7TMZ6_VITVI	D7TW88_VITVI	D7TMZ6	D7TW88	Uncharacterized protein.	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	0.901
D7TMZ6_VITVI	D7U5I9_VITVI	D7TMZ6	D7U5I9	Uncharacterized protein.	Uncharacterized protein.	0.575
D7TMZ6_VITVI	D7UAM1_VITVI	D7TMZ6	D7UAM1	Uncharacterized protein.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.430
D7TMZ6_VITVI	F6GTT8_VITVI	D7TMZ6	F6GTT8	Uncharacterized protein.	Uncharacterized protein.	0.901
D7TTP0_VITVI	D7TMZ4_VITVI	D7TTP0	D7TMZ4	Uncharacterized protein.	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	0.655
D7TTP0_VITVI	D7TW88_VITVI	D7TTP0	D7TW88	Uncharacterized protein.	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	0.627
D7TTP0_VITVI	D7U5I9_VITVI	D7TTP0	D7U5I9	Uncharacterized protein.	Uncharacterized protein.	0.758
D7TTP0_VITVI	D7UAM1_VITVI	D7TTP0	D7UAM1	Uncharacterized protein.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.649
D7TW88_VITVI	D7TMZ6_VITVI	D7TW88	D7TMZ6	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	Uncharacterized protein.	0.901
D7TW88_VITVI	D7TTP0_VITVI	D7TW88	D7TTP0	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	Uncharacterized protein.	0.627
D7TW88_VITVI	D7U5I9_VITVI	D7TW88	D7U5I9	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	Uncharacterized protein.	0.575
D7TW88_VITVI	D7UAM1_VITVI	D7TW88	D7UAM1	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.688
D7TW88_VITVI	F6GTT8_VITVI	D7TW88	F6GTT8	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	Uncharacterized protein.	0.902
D7TW88_VITVI	F6GWZ4_VITVI	D7TW88	F6GWZ4	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.605
D7TW88_VITVI	F6H042_VITVI	D7TW88	F6H042	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.579