(42 nodes) Cell redox homeostasis network (Vitis vinifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GOR	Glutathione reductase; Maintains high levels of reduced glutathione. (559 aa)
	D7SPN1_VITVI	Thioredoxin domain-containing protein. (172 aa)
	D7SJF5_VITVI	Uncharacterized protein. (262 aa)
	D7T0S4_VITVI	Uncharacterized protein. (106 aa)
	NTR	Thioredoxin reductase. (375 aa)
	F6HZY4_VITVI	Uncharacterized protein. (84 aa)
	F6HZY3_VITVI	Uncharacterized protein. (122 aa)
	F6HY85_VITVI	Uncharacterized protein. (56 aa)
	F6HQA1_VITVI	Thioredoxin domain-containing protein. (172 aa)
	F6HKV5_VITVI	Thioredoxin reductase. (529 aa)
	F6HKH2_VITVI	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily. (229 aa)
	F6HK17_VITVI	Uncharacterized protein. (76 aa)
	F6HGH9_VITVI	Uncharacterized protein. (62 aa)
	F6HE11_VITVI	Dihydrolipoyl dehydrogenase. (502 aa)
	F6H8H5_VITVI	Uncharacterized protein. (106 aa)
	F6H4H6_VITVI	Uncharacterized protein. (246 aa)
	F6H0D6_VITVI	Thioredoxin domain-containing protein. (298 aa)
	F6GVJ9_VITVI	Uncharacterized protein. (201 aa)
	E0CPB9_VITVI	Thioredoxin domain-containing protein. (200 aa)
	D7UA18_VITVI	Uncharacterized protein. (588 aa)
	D7U4H1_VITVI	Uncharacterized protein. (120 aa)
	D7U021_VITVI	Thioredoxin domain-containing protein. (216 aa)
	D7TX92_VITVI	Thioredoxin domain-containing protein. (184 aa)
	D7TUI7_VITVI	AAA domain-containing protein. (1320 aa)
	D7TSP0_VITVI	Uncharacterized protein. (106 aa)
	F6I1X8_VITVI	SP-RING-type domain-containing protein. (209 aa)
	F6I3E0_VITVI	Uncharacterized protein. (112 aa)
	F6I4R7_VITVI	Pyr_redox_2 domain-containing protein. (242 aa)
	Gr	Glutathione reductase; Maintains high levels of reduced glutathione. (496 aa)
	F6I0X8_VITVI	Uncharacterized protein. (115 aa)
	D7TPF7_VITVI	Uncharacterized protein. (230 aa)
	D7TM63_VITVI	Thioredoxin domain-containing protein. (195 aa)
	D7TI43_VITVI	Thioredoxin domain-containing protein. (309 aa)
	D7TH54_VITVI	Thioredoxin domain-containing protein. (273 aa)
	D7TCA6_VITVI	Peroxiredoxin Q. (214 aa)
	Prx	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily. (162 aa)
	D7TB87_VITVI	Thioredoxin domain-containing protein. (207 aa)
	D7T6T0_VITVI	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily. (201 aa)
	D7T0P9_VITVI	Uncharacterized protein. (63 aa)
	D7SY46_VITVI	Uncharacterized protein. (571 aa)
	D7SY21_VITVI	Uncharacterized protein. (227 aa)
	D7SWM3_VITVI	Uncharacterized protein. (72 aa)

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7SJF5_VITVI	F6H4H6_VITVI	D7SJF5	F6H4H6	Uncharacterized protein.	Uncharacterized protein.	0.569
D7SPN1_VITVI	D7T6T0_VITVI	D7SPN1	D7T6T0	Thioredoxin domain-containing protein.	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.	0.407
D7SPN1_VITVI	D7TCA6_VITVI	D7SPN1	D7TCA6	Thioredoxin domain-containing protein.	Peroxiredoxin Q.	0.430
D7SPN1_VITVI	D7TH54_VITVI	D7SPN1	D7TH54	Thioredoxin domain-containing protein.	Thioredoxin domain-containing protein.	0.781
D7SPN1_VITVI	D7TX92_VITVI	D7SPN1	D7TX92	Thioredoxin domain-containing protein.	Thioredoxin domain-containing protein.	0.644
D7SPN1_VITVI	F6HKH2_VITVI	D7SPN1	F6HKH2	Thioredoxin domain-containing protein.	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.	0.493
D7SPN1_VITVI	F6HKV5_VITVI	D7SPN1	F6HKV5	Thioredoxin domain-containing protein.	Thioredoxin reductase.	0.577
D7SPN1_VITVI	F6HQA1_VITVI	D7SPN1	F6HQA1	Thioredoxin domain-containing protein.	Thioredoxin domain-containing protein.	0.678
D7SWM3_VITVI	D7SY46_VITVI	D7SWM3	D7SY46	Uncharacterized protein.	Uncharacterized protein.	0.422
D7SWM3_VITVI	D7TH54_VITVI	D7SWM3	D7TH54	Uncharacterized protein.	Thioredoxin domain-containing protein.	0.780
D7SWM3_VITVI	D7UA18_VITVI	D7SWM3	D7UA18	Uncharacterized protein.	Uncharacterized protein.	0.422
D7SWM3_VITVI	F6HE11_VITVI	D7SWM3	F6HE11	Uncharacterized protein.	Dihydrolipoyl dehydrogenase.	0.422
D7SWM3_VITVI	F6HKV5_VITVI	D7SWM3	F6HKV5	Uncharacterized protein.	Thioredoxin reductase.	0.537
D7SWM3_VITVI	F6HZY4_VITVI	D7SWM3	F6HZY4	Uncharacterized protein.	Uncharacterized protein.	0.422
D7SWM3_VITVI	F6I3E0_VITVI	D7SWM3	F6I3E0	Uncharacterized protein.	Uncharacterized protein.	0.422
D7SWM3_VITVI	F6I4R7_VITVI	D7SWM3	F6I4R7	Uncharacterized protein.	Pyr_redox_2 domain-containing protein.	0.422
D7SWM3_VITVI	GOR	D7SWM3	D7SQK6	Uncharacterized protein.	Glutathione reductase; Maintains high levels of reduced glutathione.	0.479
D7SWM3_VITVI	Gr	D7SWM3	D7TS92	Uncharacterized protein.	Glutathione reductase; Maintains high levels of reduced glutathione.	0.479
D7SY46_VITVI	D7SWM3_VITVI	D7SY46	D7SWM3	Uncharacterized protein.	Uncharacterized protein.	0.422
D7SY46_VITVI	D7T6T0_VITVI	D7SY46	D7T6T0	Uncharacterized protein.	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.	0.422