16 items (Vitis vinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D7TG03_VITVI	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. (644 aa)
	D7SXF6_VITVI	Pectinesterase. (316 aa)
	D7TMR1_VITVI	F-box domain-containing protein. (310 aa)
	E0CSS0_VITVI	Arf-GAP domain-containing protein. (478 aa)
	E0CSV3_VITVI	NB-ARC domain-containing protein. (197 aa)
	E0CW29_VITVI	Arf-GAP domain-containing protein. (507 aa)
	F6GWE5_VITVI	Epimerase domain-containing protein. (451 aa)
	F6GWT5_VITVI	Uncharacterized protein; Belongs to the disease resistance NB-LRR family. (850 aa)
	F6H4E0_VITVI	Uncharacterized protein. (619 aa)
	F6H6V3_VITVI	Uncharacterized protein. (565 aa)
	F6H6V6_VITVI	Uncharacterized protein. (562 aa)
	F6HFF6_VITVI	Pectinesterase; Acts in the modification of cell walls via demethylesterification of cell wall pectin. In the C-terminal section; belongs to the pectinesterase family. (534 aa)
	F6HJJ3_VITVI	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (352 aa)
	F6HV24_VITVI	Uncharacterized protein. (602 aa)
	F6HV25_VITVI	Uncharacterized protein. (500 aa)
	F6HV26_VITVI	Uncharacterized protein. (1156 aa)

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6H4E0_VITVI	F6H6V3_VITVI	F6H4E0	F6H6V3	Uncharacterized protein.	Uncharacterized protein.	0.443
F6H4E0_VITVI	F6H6V6_VITVI	F6H4E0	F6H6V6	Uncharacterized protein.	Uncharacterized protein.	0.410
F6H4E0_VITVI	F6HV24_VITVI	F6H4E0	F6HV24	Uncharacterized protein.	Uncharacterized protein.	0.410
F6H4E0_VITVI	F6HV26_VITVI	F6H4E0	F6HV26	Uncharacterized protein.	Uncharacterized protein.	0.412
F6H6V3_VITVI	F6H4E0_VITVI	F6H6V3	F6H4E0	Uncharacterized protein.	Uncharacterized protein.	0.443
F6H6V6_VITVI	F6H4E0_VITVI	F6H6V6	F6H4E0	Uncharacterized protein.	Uncharacterized protein.	0.410
F6HV24_VITVI	F6H4E0_VITVI	F6HV24	F6H4E0	Uncharacterized protein.	Uncharacterized protein.	0.410
F6HV25_VITVI	F6HV26_VITVI	F6HV25	F6HV26	Uncharacterized protein.	Uncharacterized protein.	0.429
F6HV26_VITVI	F6H4E0_VITVI	F6HV26	F6H4E0	Uncharacterized protein.	Uncharacterized protein.	0.412
F6HV26_VITVI	F6HV25_VITVI	F6HV26	F6HV25	Uncharacterized protein.	Uncharacterized protein.	0.429