(13 nodes) ncRNA transcription network (Vitis vinifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D7SYH9_VITVI	Uncharacterized protein. (301 aa)
	D7T590_VITVI	Uncharacterized protein. (91 aa)
	D7T5Z0_VITVI	Uncharacterized protein. (196 aa)
	D7T5Z1_VITVI	Uncharacterized protein. (245 aa)
	D7TC57_VITVI	Uncharacterized protein. (281 aa)
	D7TDI5_VITVI	Uncharacterized protein. (71 aa)
	D7TRZ9_VITVI	Uncharacterized protein. (245 aa)
	D7TYD0_VITVI	B-block_TFIIIC domain-containing protein. (229 aa)
	D7U6Y8_VITVI	Uncharacterized protein. (103 aa)
	D7UBL1_VITVI	Uncharacterized protein. (753 aa)
	F6HBQ0_VITVI	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family. (2937 aa)
	F6HXX9_VITVI	B-block_TFIIIC domain-containing protein. (1705 aa)
	F6HY02_VITVI	Uncharacterized protein. (421 aa)

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7T590_VITVI	D7T5Z0_VITVI	D7T590	D7T5Z0	Uncharacterized protein.	Uncharacterized protein.	0.540
D7T590_VITVI	D7T5Z1_VITVI	D7T590	D7T5Z1	Uncharacterized protein.	Uncharacterized protein.	0.540
D7T590_VITVI	D7TC57_VITVI	D7T590	D7TC57	Uncharacterized protein.	Uncharacterized protein.	0.540
D7T590_VITVI	D7TDI5_VITVI	D7T590	D7TDI5	Uncharacterized protein.	Uncharacterized protein.	0.731
D7T590_VITVI	D7TRZ9_VITVI	D7T590	D7TRZ9	Uncharacterized protein.	Uncharacterized protein.	0.540
D7T590_VITVI	D7U6Y8_VITVI	D7T590	D7U6Y8	Uncharacterized protein.	Uncharacterized protein.	0.542
D7T5Z0_VITVI	D7T590_VITVI	D7T5Z0	D7T590	Uncharacterized protein.	Uncharacterized protein.	0.540
D7T5Z0_VITVI	D7T5Z1_VITVI	D7T5Z0	D7T5Z1	Uncharacterized protein.	Uncharacterized protein.	0.540
D7T5Z0_VITVI	D7TC57_VITVI	D7T5Z0	D7TC57	Uncharacterized protein.	Uncharacterized protein.	0.540
D7T5Z0_VITVI	D7TDI5_VITVI	D7T5Z0	D7TDI5	Uncharacterized protein.	Uncharacterized protein.	0.730
D7T5Z0_VITVI	D7TRZ9_VITVI	D7T5Z0	D7TRZ9	Uncharacterized protein.	Uncharacterized protein.	0.540
D7T5Z0_VITVI	D7U6Y8_VITVI	D7T5Z0	D7U6Y8	Uncharacterized protein.	Uncharacterized protein.	0.540
D7T5Z1_VITVI	D7T590_VITVI	D7T5Z1	D7T590	Uncharacterized protein.	Uncharacterized protein.	0.540
D7T5Z1_VITVI	D7T5Z0_VITVI	D7T5Z1	D7T5Z0	Uncharacterized protein.	Uncharacterized protein.	0.540
D7T5Z1_VITVI	D7TC57_VITVI	D7T5Z1	D7TC57	Uncharacterized protein.	Uncharacterized protein.	0.540
D7T5Z1_VITVI	D7TDI5_VITVI	D7T5Z1	D7TDI5	Uncharacterized protein.	Uncharacterized protein.	0.730
D7T5Z1_VITVI	D7TRZ9_VITVI	D7T5Z1	D7TRZ9	Uncharacterized protein.	Uncharacterized protein.	0.548
D7T5Z1_VITVI	D7U6Y8_VITVI	D7T5Z1	D7U6Y8	Uncharacterized protein.	Uncharacterized protein.	0.540
D7TC57_VITVI	D7T590_VITVI	D7TC57	D7T590	Uncharacterized protein.	Uncharacterized protein.	0.540
D7TC57_VITVI	D7T5Z0_VITVI	D7TC57	D7T5Z0	Uncharacterized protein.	Uncharacterized protein.	0.540