(36 nodes) Major intrinsic protein network (Vitis vinifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6HQS2_VITVI	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (241 aa)
	F6GWE3_VITVI	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (65 aa)
	F6GW83_VITVI	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (251 aa)
	F6GV46_VITVI	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (268 aa)
	D7U868_VITVI	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (354 aa)
	D7U5C6_VITVI	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (304 aa)
	D7TVX3_VITVI	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (298 aa)
	TIP1;1	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (251 aa)
	D7TJR3_VITVI	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (282 aa)
	D7T7C6_VITVI	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (259 aa)
	D7T6R9_VITVI	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (293 aa)
	D7SXB4_VITVI	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (294 aa)
	D7ST70_VITVI	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (124 aa)
	D7SLS9_VITVI	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (251 aa)
	TIP2	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (250 aa)
	PIP2;3	Putative aquaporin; Belongs to the MIP/aquaporin (TC 1.A.8) family. (287 aa)
	PIP1;4	Putative aquaporin; Belongs to the MIP/aquaporin (TC 1.A.8) family. (286 aa)
	PIP1;1	Aquaporin PIP11; Belongs to the MIP/aquaporin (TC 1.A.8) family. (286 aa)
	TIP4	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (301 aa)
	F6H983_VITVI	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (119 aa)
	F6HAV8_VITVI	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (249 aa)
	TIP1;2	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (251 aa)
	F6HLS2_VITVI	Uncharacterized protein. (118 aa)
	F6HN44_VITVI	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (141 aa)
	F6HSL2_VITVI	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (281 aa)
	F6HSL3_VITVI	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (117 aa)
	F6HWL8_VITVI	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (124 aa)
	PIP2;2	Plasma membrane 22 aquaporin; Belongs to the MIP/aquaporin (TC 1.A.8) family. (279 aa)
	F6I152_VITVI	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (320 aa)
	F6I638_VITVI	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (286 aa)
	F6I6Q5_VITVI	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (89 aa)
	TIP2;1	Putative aquaporin; Belongs to the MIP/aquaporin (TC 1.A.8) family. (249 aa)
	PIP1;3	Putative aquaporin; Belongs to the MIP/aquaporin (TC 1.A.8) family. (287 aa)
	VITISV_037967	Small basic intrinsic protein 1; Belongs to the MIP/aquaporin (TC 1.A.8) family. (238 aa)
	pip2	Aquaporin PIP2; Belongs to the MIP/aquaporin (TC 1.A.8) family. (280 aa)
	PIP2-1	Aquaporin; Belongs to the MIP/aquaporin (TC 1.A.8) family. (284 aa)

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7SXB4_VITVI	F6HQS2_VITVI	D7SXB4	F6HQS2	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.414
D7SXB4_VITVI	VITISV_037967	D7SXB4	Q107W9	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Small basic intrinsic protein 1; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.559
D7T6R9_VITVI	F6HQS2_VITVI	D7T6R9	F6HQS2	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.486
D7T6R9_VITVI	VITISV_037967	D7T6R9	Q107W9	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Small basic intrinsic protein 1; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.414
D7T7C6_VITVI	F6HQS2_VITVI	D7T7C6	F6HQS2	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.485
D7T7C6_VITVI	F6HSL2_VITVI	D7T7C6	F6HSL2	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.482
D7T7C6_VITVI	VITISV_037967	D7T7C6	Q107W9	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Small basic intrinsic protein 1; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.420
D7U5C6_VITVI	F6HWL8_VITVI	D7U5C6	F6HWL8	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.504
D7U5C6_VITVI	F6I6Q5_VITVI	D7U5C6	F6I6Q5	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.426
F6HAV8_VITVI	F6HQS2_VITVI	F6HAV8	F6HQS2	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.494
F6HAV8_VITVI	VITISV_037967	F6HAV8	Q107W9	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Small basic intrinsic protein 1; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.412
F6HQS2_VITVI	D7SXB4_VITVI	F6HQS2	D7SXB4	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.414
F6HQS2_VITVI	D7T6R9_VITVI	F6HQS2	D7T6R9	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.486
F6HQS2_VITVI	D7T7C6_VITVI	F6HQS2	D7T7C6	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.485
F6HQS2_VITVI	F6HAV8_VITVI	F6HQS2	F6HAV8	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.494
F6HQS2_VITVI	TIP1;2	F6HQS2	F6HKC8	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.450
F6HQS2_VITVI	TIP2;1	F6HQS2	Q0MX09	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Putative aquaporin; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.436
F6HSL2_VITVI	D7T7C6_VITVI	F6HSL2	D7T7C6	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.482
F6HSL2_VITVI	TIP1;2	F6HSL2	F6HKC8	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.409
F6HWL8_VITVI	D7U5C6_VITVI	F6HWL8	D7U5C6	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.504