(15 nodes) Peptidase M41 network (Vitis vinifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6H9V4_VITVI	AAA domain-containing protein. (1010 aa)
	F6GX35_VITVI	Peptidase_M41 domain-containing protein. (158 aa)
	F6HL95_VITVI	Peptidase_M41 domain-containing protein. (191 aa)
	F6HS84_VITVI	Peptidase_M41 domain-containing protein. (117 aa)
	F6HYC2_VITVI	AAA domain-containing protein. (888 aa)
	F6I425_VITVI	Peptidase_M41 domain-containing protein. (133 aa)
	D7UB46_VITVI	AAA domain-containing protein. (907 aa)
	F6H6F7_VITVI	AAA domain-containing protein. (787 aa)
	D7TUI7_VITVI	AAA domain-containing protein. (1320 aa)
	D7SKC8_VITVI	AAA domain-containing protein. (820 aa)
	F6H0B6_VITVI	AAA domain-containing protein. (706 aa)
	F6H3N2_VITVI	AAA domain-containing protein; Belongs to the AAA ATPase family. (698 aa)
	F6GUU2_VITVI	AAA domain-containing protein. (818 aa)
	F6H5S6_VITVI	AAA domain-containing protein; Belongs to the AAA ATPase family. (676 aa)
	F6H539_VITVI	AAA domain-containing protein; Belongs to the AAA ATPase family. (694 aa)

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7SKC8_VITVI	F6GX35_VITVI	D7SKC8	F6GX35	AAA domain-containing protein.	Peptidase_M41 domain-containing protein.	0.540
D7SKC8_VITVI	F6H9V4_VITVI	D7SKC8	F6H9V4	AAA domain-containing protein.	AAA domain-containing protein.	0.616
D7SKC8_VITVI	F6HL95_VITVI	D7SKC8	F6HL95	AAA domain-containing protein.	Peptidase_M41 domain-containing protein.	0.547
D7SKC8_VITVI	F6HS84_VITVI	D7SKC8	F6HS84	AAA domain-containing protein.	Peptidase_M41 domain-containing protein.	0.540
D7SKC8_VITVI	F6I425_VITVI	D7SKC8	F6I425	AAA domain-containing protein.	Peptidase_M41 domain-containing protein.	0.540
D7TUI7_VITVI	F6HYC2_VITVI	D7TUI7	F6HYC2	AAA domain-containing protein.	AAA domain-containing protein.	0.481
D7UB46_VITVI	F6H9V4_VITVI	D7UB46	F6H9V4	AAA domain-containing protein.	AAA domain-containing protein.	0.403
F6GX35_VITVI	D7SKC8_VITVI	F6GX35	D7SKC8	Peptidase_M41 domain-containing protein.	AAA domain-containing protein.	0.540
F6GX35_VITVI	F6H9V4_VITVI	F6GX35	F6H9V4	Peptidase_M41 domain-containing protein.	AAA domain-containing protein.	0.575
F6GX35_VITVI	F6HL95_VITVI	F6GX35	F6HL95	Peptidase_M41 domain-containing protein.	Peptidase_M41 domain-containing protein.	0.540
F6GX35_VITVI	F6HS84_VITVI	F6GX35	F6HS84	Peptidase_M41 domain-containing protein.	Peptidase_M41 domain-containing protein.	0.540
F6GX35_VITVI	F6I425_VITVI	F6GX35	F6I425	Peptidase_M41 domain-containing protein.	Peptidase_M41 domain-containing protein.	0.547
F6H9V4_VITVI	D7SKC8_VITVI	F6H9V4	D7SKC8	AAA domain-containing protein.	AAA domain-containing protein.	0.616
F6H9V4_VITVI	D7UB46_VITVI	F6H9V4	D7UB46	AAA domain-containing protein.	AAA domain-containing protein.	0.403
F6H9V4_VITVI	F6GX35_VITVI	F6H9V4	F6GX35	AAA domain-containing protein.	Peptidase_M41 domain-containing protein.	0.575
F6H9V4_VITVI	F6HL95_VITVI	F6H9V4	F6HL95	AAA domain-containing protein.	Peptidase_M41 domain-containing protein.	0.540
F6H9V4_VITVI	F6HS84_VITVI	F6H9V4	F6HS84	AAA domain-containing protein.	Peptidase_M41 domain-containing protein.	0.540
F6H9V4_VITVI	F6I425_VITVI	F6H9V4	F6I425	AAA domain-containing protein.	Peptidase_M41 domain-containing protein.	0.543
F6HL95_VITVI	D7SKC8_VITVI	F6HL95	D7SKC8	Peptidase_M41 domain-containing protein.	AAA domain-containing protein.	0.547
F6HL95_VITVI	F6GX35_VITVI	F6HL95	F6GX35	Peptidase_M41 domain-containing protein.	Peptidase_M41 domain-containing protein.	0.540