(38 nodes) Late embryogenesis abundant protein, LEA_2 subgroup network (Vitis vinifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6I699_VITVI	LEA_2 domain-containing protein. (246 aa)
	F6I653_VITVI	WHy domain-containing protein. (152 aa)
	F6I4W5_VITVI	LEA_2 domain-containing protein. (217 aa)
	F6I2Y6_VITVI	LEA_2 domain-containing protein. (202 aa)
	F6I0T7_VITVI	LEA_2 domain-containing protein. (334 aa)
	F6HYF7_VITVI	LEA_2 domain-containing protein. (230 aa)
	F6HUN9_VITVI	LEA_2 domain-containing protein. (193 aa)
	F6HUN8_VITVI	LEA_2 domain-containing protein. (213 aa)
	F6HU27_VITVI	LEA_2 domain-containing protein. (194 aa)
	F6HMR5_VITVI	LEA_2 domain-containing protein. (188 aa)
	F6HKR7_VITVI	LEA_2 domain-containing protein. (206 aa)
	F6HHB7_VITVI	LEA_2 domain-containing protein. (256 aa)
	F6HH25_VITVI	LEA_2 domain-containing protein. (241 aa)
	F6HE80_VITVI	LEA_2 domain-containing protein. (288 aa)
	F6H772_VITVI	LEA_2 domain-containing protein. (210 aa)
	F6H6K9_VITVI	LEA_2 domain-containing protein. (214 aa)
	F6H6K8_VITVI	LEA_2 domain-containing protein. (211 aa)
	F6H4K1_VITVI	LEA_2 domain-containing protein. (309 aa)
	F6H3N7_VITVI	LEA_2 domain-containing protein. (265 aa)
	F6H2D6_VITVI	LEA_2 domain-containing protein. (202 aa)
	F6H1R4_VITVI	LEA_2 domain-containing protein. (243 aa)
	F6GW77_VITVI	LEA_2 domain-containing protein. (262 aa)
	E0CVK3_VITVI	LEA_2 domain-containing protein. (215 aa)
	D7UCF2_VITVI	WHy domain-containing protein. (152 aa)
	D7U0H5_VITVI	LEA_2 domain-containing protein. (310 aa)
	D7TKX3_VITVI	LEA_2 domain-containing protein. (215 aa)
	D7TCT3_VITVI	WHy domain-containing protein. (184 aa)
	D7TCP0_VITVI	LEA_2 domain-containing protein. (208 aa)
	D7TBM6_VITVI	LEA_2 domain-containing protein. (302 aa)
	D7T2N7_VITVI	Uncharacterized protein. (400 aa)
	D7T1H6_VITVI	LEA_2 domain-containing protein. (267 aa)
	D7T0F1_VITVI	LEA_2 domain-containing protein. (251 aa)
	VITISV_040609	LEA_2 domain-containing protein. (220 aa)
	VITISV_037464	LEA_2 domain-containing protein. (186 aa)
	VITISV_031741	LEA_2 domain-containing protein. (253 aa)
	VITISV_023904	LEA_2 domain-containing protein. (207 aa)
	VITISV_006164	WHy domain-containing protein. (151 aa)
	F6I6E4_VITVI	LEA_2 domain-containing protein. (194 aa)

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6H2D6_VITVI	F6H772_VITVI	F6H2D6	F6H772	LEA_2 domain-containing protein.	LEA_2 domain-containing protein.	0.407
F6H772_VITVI	F6H2D6_VITVI	F6H772	F6H2D6	LEA_2 domain-containing protein.	LEA_2 domain-containing protein.	0.407
F6HMR5_VITVI	F6I699_VITVI	F6HMR5	F6I699	LEA_2 domain-containing protein.	LEA_2 domain-containing protein.	0.570
F6HUN9_VITVI	F6I699_VITVI	F6HUN9	F6I699	LEA_2 domain-containing protein.	LEA_2 domain-containing protein.	0.469
F6I699_VITVI	F6HMR5_VITVI	F6I699	F6HMR5	LEA_2 domain-containing protein.	LEA_2 domain-containing protein.	0.570
F6I699_VITVI	F6HUN9_VITVI	F6I699	F6HUN9	LEA_2 domain-containing protein.	LEA_2 domain-containing protein.	0.469