(35 nodes) Parallel beta-helix repeat network (Vitis vinifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D7SIG3_VITVI	Uncharacterized protein. (387 aa)
	VITISV_035659	Uncharacterized protein. (389 aa)
	VITISV_035657	Uncharacterized protein. (389 aa)
	D7TCB9_VITVI	Uncharacterized protein. (493 aa)
	D7T9Y0_VITVI	Uncharacterized protein. (396 aa)
	D7SYA6_VITVI	Uncharacterized protein. (405 aa)
	D7SIG2_VITVI	Uncharacterized protein. (393 aa)
	Q94B15_VITVI	Polygalacturonase PG1. (444 aa)
	F6I0Q4_VITVI	Uncharacterized protein. (419 aa)
	F6I0D8_VITVI	Uncharacterized protein. (517 aa)
	F6HZD4_VITVI	Uncharacterized protein. (465 aa)
	F6HL70_VITVI	Uncharacterized protein. (435 aa)
	F6HL69_VITVI	Uncharacterized protein. (434 aa)
	F6HHV8_VITVI	Uncharacterized protein. (518 aa)
	F6HHK3_VITVI	Uncharacterized protein. (590 aa)
	F6HHK2_VITVI	Uncharacterized protein. (474 aa)
	F6HHK1_VITVI	Uncharacterized protein. (347 aa)
	F6HFT3_VITVI	Pectate_lyase_3 domain-containing protein. (498 aa)
	F6HE14_VITVI	Uncharacterized protein. (477 aa)
	F6H7W0_VITVI	Uncharacterized protein. (400 aa)
	F6H6C6_VITVI	Uncharacterized protein. (1051 aa)
	F6H559_VITVI	Uncharacterized protein. (1233 aa)
	E0CTY4_VITVI	Uncharacterized protein. (414 aa)
	D7UA81_VITVI	Uncharacterized protein. (464 aa)
	D7U2T9_VITVI	Uncharacterized protein. (466 aa)
	D7U2J3_VITVI	Uncharacterized protein. (302 aa)
	D7U111_VITVI	Uncharacterized protein. (404 aa)
	D7U107_VITVI	Uncharacterized protein. (391 aa)
	D7TWM6_VITVI	Uncharacterized protein. (483 aa)
	D7TVE6_VITVI	Uncharacterized protein. (447 aa)
	D7TSF4_VITVI	Uncharacterized protein. (371 aa)
	D7TI31_VITVI	Uncharacterized protein. (442 aa)
	D7TI29_VITVI	Uncharacterized protein. (442 aa)
	D7TDK7_VITVI	Uncharacterized protein. (479 aa)
	D7TD16_VITVI	Uncharacterized protein. (393 aa)

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7SYA6_VITVI	D7TI29_VITVI	D7SYA6	D7TI29	Uncharacterized protein.	Uncharacterized protein.	0.694
D7SYA6_VITVI	D7TI31_VITVI	D7SYA6	D7TI31	Uncharacterized protein.	Uncharacterized protein.	0.692
D7SYA6_VITVI	D7TSF4_VITVI	D7SYA6	D7TSF4	Uncharacterized protein.	Uncharacterized protein.	0.698
D7SYA6_VITVI	D7TWM6_VITVI	D7SYA6	D7TWM6	Uncharacterized protein.	Uncharacterized protein.	0.700
D7SYA6_VITVI	D7U111_VITVI	D7SYA6	D7U111	Uncharacterized protein.	Uncharacterized protein.	0.698
D7SYA6_VITVI	F6H7W0_VITVI	D7SYA6	F6H7W0	Uncharacterized protein.	Uncharacterized protein.	0.688
D7SYA6_VITVI	F6HL69_VITVI	D7SYA6	F6HL69	Uncharacterized protein.	Uncharacterized protein.	0.694
D7SYA6_VITVI	F6HL70_VITVI	D7SYA6	F6HL70	Uncharacterized protein.	Uncharacterized protein.	0.695
D7SYA6_VITVI	Q94B15_VITVI	D7SYA6	Q94B15	Uncharacterized protein.	Polygalacturonase PG1.	0.686
D7SYA6_VITVI	VITISV_035657	D7SYA6	A5BNQ7	Uncharacterized protein.	Uncharacterized protein.	0.688
D7SYA6_VITVI	VITISV_035659	D7SYA6	A5BNQ9	Uncharacterized protein.	Uncharacterized protein.	0.689
D7T9Y0_VITVI	D7TI29_VITVI	D7T9Y0	D7TI29	Uncharacterized protein.	Uncharacterized protein.	0.690
D7T9Y0_VITVI	D7TI31_VITVI	D7T9Y0	D7TI31	Uncharacterized protein.	Uncharacterized protein.	0.688
D7T9Y0_VITVI	D7TSF4_VITVI	D7T9Y0	D7TSF4	Uncharacterized protein.	Uncharacterized protein.	0.685
D7T9Y0_VITVI	D7TWM6_VITVI	D7T9Y0	D7TWM6	Uncharacterized protein.	Uncharacterized protein.	0.699
D7T9Y0_VITVI	D7U111_VITVI	D7T9Y0	D7U111	Uncharacterized protein.	Uncharacterized protein.	0.693
D7T9Y0_VITVI	F6H7W0_VITVI	D7T9Y0	F6H7W0	Uncharacterized protein.	Uncharacterized protein.	0.707
D7T9Y0_VITVI	F6HL69_VITVI	D7T9Y0	F6HL69	Uncharacterized protein.	Uncharacterized protein.	0.689
D7T9Y0_VITVI	F6HL70_VITVI	D7T9Y0	F6HL70	Uncharacterized protein.	Uncharacterized protein.	0.689
D7T9Y0_VITVI	Q94B15_VITVI	D7T9Y0	Q94B15	Uncharacterized protein.	Polygalacturonase PG1.	0.681