(5 nodes) SUF system FeS cluster assembly, SufBD superfamily network (Vitis vinifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6HTA7_VITVI	Uncharacterized protein. (375 aa)
	D7TUC9_VITVI	Uncharacterized protein. (279 aa)
	F6H7N7_VITVI	Uncharacterized protein. (86 aa)
	F6H7N8_VITVI	Uncharacterized protein. (509 aa)
	F6HTA6_VITVI	Uncharacterized protein. (128 aa)

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7TUC9_VITVI	F6H7N7_VITVI	D7TUC9	F6H7N7	Uncharacterized protein.	Uncharacterized protein.	0.603
D7TUC9_VITVI	F6H7N8_VITVI	D7TUC9	F6H7N8	Uncharacterized protein.	Uncharacterized protein.	0.610
F6H7N7_VITVI	D7TUC9_VITVI	F6H7N7	D7TUC9	Uncharacterized protein.	Uncharacterized protein.	0.603
F6H7N7_VITVI	F6H7N8_VITVI	F6H7N7	F6H7N8	Uncharacterized protein.	Uncharacterized protein.	0.538
F6H7N7_VITVI	F6HTA6_VITVI	F6H7N7	F6HTA6	Uncharacterized protein.	Uncharacterized protein.	0.595
F6H7N7_VITVI	F6HTA7_VITVI	F6H7N7	F6HTA7	Uncharacterized protein.	Uncharacterized protein.	0.447
F6H7N8_VITVI	D7TUC9_VITVI	F6H7N8	D7TUC9	Uncharacterized protein.	Uncharacterized protein.	0.610
F6H7N8_VITVI	F6H7N7_VITVI	F6H7N8	F6H7N7	Uncharacterized protein.	Uncharacterized protein.	0.538
F6H7N8_VITVI	F6HTA6_VITVI	F6H7N8	F6HTA6	Uncharacterized protein.	Uncharacterized protein.	0.597
F6H7N8_VITVI	F6HTA7_VITVI	F6H7N8	F6HTA7	Uncharacterized protein.	Uncharacterized protein.	0.484
F6HTA6_VITVI	F6H7N7_VITVI	F6HTA6	F6H7N7	Uncharacterized protein.	Uncharacterized protein.	0.595
F6HTA6_VITVI	F6H7N8_VITVI	F6HTA6	F6H7N8	Uncharacterized protein.	Uncharacterized protein.	0.597
F6HTA6_VITVI	F6HTA7_VITVI	F6HTA6	F6HTA7	Uncharacterized protein.	Uncharacterized protein.	0.523
F6HTA7_VITVI	F6H7N7_VITVI	F6HTA7	F6H7N7	Uncharacterized protein.	Uncharacterized protein.	0.447
F6HTA7_VITVI	F6H7N8_VITVI	F6HTA7	F6H7N8	Uncharacterized protein.	Uncharacterized protein.	0.484
F6HTA7_VITVI	F6HTA6_VITVI	F6HTA7	F6HTA6	Uncharacterized protein.	Uncharacterized protein.	0.523