11 items (Vitis vinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6HV24_VITVI	Uncharacterized protein. (602 aa)
	F6HV26_VITVI	Uncharacterized protein. (1156 aa)
	F6H6V3_VITVI	Uncharacterized protein. (565 aa)
	F6H6V4_VITVI	Uncharacterized protein. (1043 aa)
	F6H6V6_VITVI	Uncharacterized protein. (562 aa)
	F6HV25_VITVI	Uncharacterized protein. (500 aa)
	F6GSY6_VITVI	Uncharacterized protein. (670 aa)
	EDS1	Uncharacterized protein. (596 aa)
	D7SI06_VITVI	Uncharacterized protein. (600 aa)
	D7SI01_VITVI	Uncharacterized protein. (637 aa)
	F6H4E0_VITVI	Uncharacterized protein. (619 aa)

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7SI01_VITVI	F6H4E0_VITVI	D7SI01	F6H4E0	Uncharacterized protein.	Uncharacterized protein.	0.826
D7SI01_VITVI	F6H6V3_VITVI	D7SI01	F6H6V3	Uncharacterized protein.	Uncharacterized protein.	0.523
D7SI01_VITVI	F6H6V6_VITVI	D7SI01	F6H6V6	Uncharacterized protein.	Uncharacterized protein.	0.523
D7SI01_VITVI	F6HV24_VITVI	D7SI01	F6HV24	Uncharacterized protein.	Uncharacterized protein.	0.526
D7SI01_VITVI	F6HV25_VITVI	D7SI01	F6HV25	Uncharacterized protein.	Uncharacterized protein.	0.528
D7SI01_VITVI	F6HV26_VITVI	D7SI01	F6HV26	Uncharacterized protein.	Uncharacterized protein.	0.526
D7SI06_VITVI	F6H4E0_VITVI	D7SI06	F6H4E0	Uncharacterized protein.	Uncharacterized protein.	0.824
D7SI06_VITVI	F6H6V3_VITVI	D7SI06	F6H6V3	Uncharacterized protein.	Uncharacterized protein.	0.524
D7SI06_VITVI	F6H6V6_VITVI	D7SI06	F6H6V6	Uncharacterized protein.	Uncharacterized protein.	0.523
D7SI06_VITVI	F6HV24_VITVI	D7SI06	F6HV24	Uncharacterized protein.	Uncharacterized protein.	0.528
D7SI06_VITVI	F6HV25_VITVI	D7SI06	F6HV25	Uncharacterized protein.	Uncharacterized protein.	0.528
D7SI06_VITVI	F6HV26_VITVI	D7SI06	F6HV26	Uncharacterized protein.	Uncharacterized protein.	0.526
EDS1	F6H4E0_VITVI	F6GSX7	F6H4E0	Uncharacterized protein.	Uncharacterized protein.	0.847
EDS1	F6H6V3_VITVI	F6GSX7	F6H6V3	Uncharacterized protein.	Uncharacterized protein.	0.524
EDS1	F6H6V6_VITVI	F6GSX7	F6H6V6	Uncharacterized protein.	Uncharacterized protein.	0.523
EDS1	F6HV24_VITVI	F6GSX7	F6HV24	Uncharacterized protein.	Uncharacterized protein.	0.526
EDS1	F6HV25_VITVI	F6GSX7	F6HV25	Uncharacterized protein.	Uncharacterized protein.	0.561
EDS1	F6HV26_VITVI	F6GSX7	F6HV26	Uncharacterized protein.	Uncharacterized protein.	0.528
F6GSY6_VITVI	F6H4E0_VITVI	F6GSY6	F6H4E0	Uncharacterized protein.	Uncharacterized protein.	0.793
F6GSY6_VITVI	F6H6V3_VITVI	F6GSY6	F6H6V3	Uncharacterized protein.	Uncharacterized protein.	0.523