25 items (Vitis vinifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D7SLU3_VITVI	Uncharacterized protein. (546 aa)
	D7SPJ1_VITVI	Uncharacterized protein. (149 aa)
	D7STG0_VITVI	Uncharacterized protein. (75 aa)
	D7TB48_VITVI	T-complex protein 1 subunit gamma. (557 aa)
	D7TI60_VITVI	Uncharacterized protein. (545 aa)
	D7TQ08_VITVI	WD_REPEATS_REGION domain-containing protein. (377 aa)
	D7TT48_VITVI	Uncharacterized protein. (535 aa)
	D7TXF1_VITVI	Prefoldin subunit 4; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins; Belongs to the prefoldin subunit beta family. (126 aa)
	D7TYK6_VITVI	Uncharacterized protein. (160 aa)
	D7TYZ1_VITVI	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin. (562 aa)
	F6GTS3_VITVI	T-complex protein 1 subunit delta. (533 aa)
	F6GVC5_VITVI	Tubulin-specific chaperone A; Belongs to the TBCA family. (117 aa)
	F6GVJ8_VITVI	Gag_pre-integrs domain-containing protein. (662 aa)
	VITISV_018866	Uncharacterized protein. (151 aa)
	F6I392_VITVI	TFCD_C domain-containing protein. (1269 aa)
	F6H0C8_VITVI	Uncharacterized protein. (529 aa)
	F6H5B8_VITVI	Uncharacterized protein. (535 aa)
	F6H713_VITVI	Prefoldin subunit 3; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins; Belongs to the prefoldin subunit alpha family. (188 aa)
	F6H8Y9_VITVI	GTP_EFTU_D3 domain-containing protein. (369 aa)
	F6H9Q5_VITVI	Uncharacterized protein. (130 aa)
	F6HB19_VITVI	Uncharacterized protein; Belongs to the TCP-1 chaperonin family. (161 aa)
	F6HDQ6_VITVI	Uncharacterized protein. (279 aa)
	F6HLR2_VITVI	Uncharacterized protein. (133 aa)
	F6HR34_VITVI	Uncharacterized protein; Belongs to the TCP-1 chaperonin family. (180 aa)
	D7SHT5_VITVI	T-complex protein 1 subunit gamma. (557 aa)

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D7SHT5_VITVI	D7SLU3_VITVI	D7SHT5	D7SLU3	T-complex protein 1 subunit gamma.	Uncharacterized protein.	0.994
D7SHT5_VITVI	D7SPJ1_VITVI	D7SHT5	D7SPJ1	T-complex protein 1 subunit gamma.	Uncharacterized protein.	0.980
D7SHT5_VITVI	D7TB48_VITVI	D7SHT5	D7TB48	T-complex protein 1 subunit gamma.	T-complex protein 1 subunit gamma.	0.543
D7SHT5_VITVI	D7TI60_VITVI	D7SHT5	D7TI60	T-complex protein 1 subunit gamma.	Uncharacterized protein.	0.995
D7SHT5_VITVI	D7TQ08_VITVI	D7SHT5	D7TQ08	T-complex protein 1 subunit gamma.	WD_REPEATS_REGION domain-containing protein.	0.675
D7SHT5_VITVI	D7TT48_VITVI	D7SHT5	D7TT48	T-complex protein 1 subunit gamma.	Uncharacterized protein.	0.992
D7SHT5_VITVI	D7TXF1_VITVI	D7SHT5	D7TXF1	T-complex protein 1 subunit gamma.	Prefoldin subunit 4; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins; Belongs to the prefoldin subunit beta family.	0.611
D7SHT5_VITVI	D7TYZ1_VITVI	D7SHT5	D7TYZ1	T-complex protein 1 subunit gamma.	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	0.995
D7SHT5_VITVI	F6GTS3_VITVI	D7SHT5	F6GTS3	T-complex protein 1 subunit gamma.	T-complex protein 1 subunit delta.	0.981
D7SHT5_VITVI	F6GVJ8_VITVI	D7SHT5	F6GVJ8	T-complex protein 1 subunit gamma.	Gag_pre-integrs domain-containing protein.	0.965
D7SHT5_VITVI	F6H0C8_VITVI	D7SHT5	F6H0C8	T-complex protein 1 subunit gamma.	Uncharacterized protein.	0.995
D7SHT5_VITVI	F6H5B8_VITVI	D7SHT5	F6H5B8	T-complex protein 1 subunit gamma.	Uncharacterized protein.	0.965
D7SHT5_VITVI	F6H713_VITVI	D7SHT5	F6H713	T-complex protein 1 subunit gamma.	Prefoldin subunit 3; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins; Belongs to the prefoldin subunit alpha family.	0.601
D7SHT5_VITVI	F6H8Y9_VITVI	D7SHT5	F6H8Y9	T-complex protein 1 subunit gamma.	GTP_EFTU_D3 domain-containing protein.	0.924
D7SHT5_VITVI	F6H9Q5_VITVI	D7SHT5	F6H9Q5	T-complex protein 1 subunit gamma.	Uncharacterized protein.	0.735
D7SHT5_VITVI	F6HB19_VITVI	D7SHT5	F6HB19	T-complex protein 1 subunit gamma.	Uncharacterized protein; Belongs to the TCP-1 chaperonin family.	0.545
D7SHT5_VITVI	F6HDQ6_VITVI	D7SHT5	F6HDQ6	T-complex protein 1 subunit gamma.	Uncharacterized protein.	0.676
D7SHT5_VITVI	F6HLR2_VITVI	D7SHT5	F6HLR2	T-complex protein 1 subunit gamma.	Uncharacterized protein.	0.564
D7SHT5_VITVI	F6HR34_VITVI	D7SHT5	F6HR34	T-complex protein 1 subunit gamma.	Uncharacterized protein; Belongs to the TCP-1 chaperonin family.	0.924
D7SHT5_VITVI	VITISV_018866	D7SHT5	A5BBT9	T-complex protein 1 subunit gamma.	Uncharacterized protein.	0.709