(42 nodes) (2012) Rapid sequencing of the bamboo mitochondrial genome using Illumina technology and parallel episodic evolution of organelle genomes in grasses. network (Vitis vinifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rps2	30S ribosomal protein S2, chloroplastic. (236 aa)
	ccmFN	CcmFN protein. (574 aa)
	rps11	Ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family. (138 aa)
	rps19	Ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family. (94 aa)
	nad1	NADH-ubiquinone oxidoreductase chain 1; Belongs to the complex I subunit 1 family. (327 aa)
	matR	Maturase. (401 aa)
	nad7	NADH dehydrogenase subunit 7; Belongs to the complex I 49 kDa subunit family. (394 aa)
	nad2	NADH dehydrogenase subunit 2. (488 aa)
	ccmFC	Cytochrome c biogenesis FC. (505 aa)
	rpl5	Ribosomal protein L5. (183 aa)
	cox1	Cytochrome c oxidase subunit 1; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. (527 aa)
	nad5	NADH-ubiquinone oxidoreductase chain 5; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. (670 aa)
	rps7	Ribosomal protein S7. (148 aa)
	atp6	ATP synthase subunit a. (388 aa)
	nad4L	NADH dehydrogenase subunit 4L. (100 aa)
	atp4	ATPase subunit 4. (198 aa)
	rpl2	Ribosomal protein L2. (334 aa)
	nad9	NADH dehydrogenase subunit 9; Belongs to the complex I 30 kDa subunit family. (190 aa)
	ccmC	Putative cytochrome c biosynthesis ccmC-like mitochondrial protein; May be involved in the export of heme to the mitochondrion for the biogenesis of c-type cytochromes. Belongs to the CcmC/CycZ/HelC family. (250 aa)
	rps13	Ribosomal protein S13; Belongs to the universal ribosomal protein uS13 family. (116 aa)
	rps10	Ribosomal protein S10. (120 aa)
	atp8	ATPase subunit 8. (159 aa)
	rps1	Ribosomal protein S1. (167 aa)
	rps12	Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family. (125 aa)
	nad3	NADH-ubiquinone oxidoreductase chain 3; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. (118 aa)
	ccmB	Cytochrome c maturation protein CcmB. (206 aa)
	atp1	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. (509 aa)
	cox2	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1. (261 aa)
	atp9	ATP synthase subunit 9, mitochondrial; Belongs to the ATPase C chain family. (74 aa)
	nad4	NADH-ubiquinone oxidoreductase chain 4; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. (495 aa)
	nad6	NADH-ubiquinone oxidoreductase chain 6; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. (223 aa)
	SDH4	Uncharacterized protein. (600 aa)
	rps7-A	30S ribosomal protein S7, chloroplastic; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. (155 aa)
	rpl2-A	50S ribosomal protein L2, chloroplastic; Belongs to the universal ribosomal protein uL2 family. (274 aa)
	rps19-2	30S ribosomal protein S19, chloroplastic; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (92 aa)
	rps3	30S ribosomal protein S3, chloroplastic; Belongs to the universal ribosomal protein uS3 family. (218 aa)
	rpl16	50S ribosomal protein L16, chloroplastic; Belongs to the universal ribosomal protein uL16 family. (135 aa)
	rpl14	50S ribosomal protein L14, chloroplastic; Binds to 23S rRNA. (122 aa)
	rps8	30S ribosomal protein S8, chloroplastic; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit. (134 aa)
	rps11-2	30S ribosomal protein S11, chloroplastic; Belongs to the universal ribosomal protein uS11 family. (138 aa)
	rps12-A	30S ribosomal protein S12, chloroplastic; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits (By similarity). (123 aa)
	rps14	30S ribosomal protein S14, chloroplastic; Binds 16S rRNA, required for the assembly of 30S particles. (100 aa)

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDH4	atp1	D7TUX3	B6VJY3	Uncharacterized protein.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.467
SDH4	atp8	D7TUX3	B6VJW7	Uncharacterized protein.	ATPase subunit 8.	0.430
SDH4	atp9	D7TUX3	B6VJY9	Uncharacterized protein.	ATP synthase subunit 9, mitochondrial; Belongs to the ATPase C chain family.	0.426
SDH4	rpl5	D7TUX3	B6VJT5	Uncharacterized protein.	Ribosomal protein L5.	0.611
SDH4	rps1	D7TUX3	B6VJX0	Uncharacterized protein.	Ribosomal protein S1.	0.400
SDH4	rps10	D7TUX3	B6VJW6	Uncharacterized protein.	Ribosomal protein S10.	0.612
SDH4	rps13	D7TUX3	B6VJW1	Uncharacterized protein.	Ribosomal protein S13; Belongs to the universal ribosomal protein uS13 family.	0.441
atp1	SDH4	B6VJY3	D7TUX3	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein.	0.467
atp1	atp4	B6VJY3	B6VJV3	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATPase subunit 4.	0.796
atp1	atp6	B6VJY3	B6VJU9	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit a.	0.967
atp1	atp8	B6VJY3	B6VJW7	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATPase subunit 8.	0.846
atp1	atp9	B6VJY3	B6VJY9	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit 9, mitochondrial; Belongs to the ATPase C chain family.	0.980
atp1	ccmB	B6VJY3	B6VJX3	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Cytochrome c maturation protein CcmB.	0.426
atp1	ccmC	B6VJY3	B6VJV6	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Putative cytochrome c biosynthesis ccmC-like mitochondrial protein; May be involved in the export of heme to the mitochondrion for the biogenesis of c-type cytochromes. Belongs to the CcmC/CycZ/HelC family.	0.486
atp1	ccmFC	B6VJY3	B6VJT1	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Cytochrome c biogenesis FC.	0.438
atp1	cox1	B6VJY3	B6VJT8	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Cytochrome c oxidase subunit 1; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.	0.652
atp1	cox2	B6VJY3	B6VJY8	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	0.680
atp1	matR	B6VJY3	B6VJS6	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Maturase.	0.576
atp1	nad1	B6VJY3	B6VJS5	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	NADH-ubiquinone oxidoreductase chain 1; Belongs to the complex I subunit 1 family.	0.610
atp1	nad3	B6VJY3	B6VJX2	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	NADH-ubiquinone oxidoreductase chain 3; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.728