(16 nodes) (2014) Complete chloroplast genome sequence of Omani lime (Citrus aurantiifolia) and comparative analysis within the rosids. network (Vitis vinifera)

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	rps19	Ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family. (94 aa)
	matK	Maturase K; Usually encoded in the trnK tRNA gene intron. Probably assists in splicing its own and other chloroplast group II introns. Belongs to the intron maturase 2 family. MatK subfamily. (502 aa)
	rps16	30S ribosomal protein S16, chloroplastic. (91 aa)
	rps12	Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family. (125 aa)
	rpl32	Ribosomal protein L32. (57 aa)
	psbA	Photosystem II protein D1; Photosystem II (PSII) is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1/D2 (PsbA/PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors. (353 aa)
	psaB	Photosystem I P700 chlorophyll a apoprotein A2; PsaA and PsaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX. PSI is a plastocyanin-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn. Oxidized P700 is reduced on the lumenal side of the thylakoid membrane by plastocyanin. (734 aa)
	psaA	Photosystem I P700 chlorophyll a apoprotein A1; PsaA and PsaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX. PSI is a plastocyanin-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn. Oxidized P700 is reduced on the lumenal side of the thylakoid membrane by plastocyanin. (750 aa)
	accD	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. (491 aa)
	psaI	Photosystem I reaction center subunit VIII; May help in the organization of the PsaL subunit. Belongs to the PsaI family. (36 aa)
	rps12-A	30S ribosomal protein S12, chloroplastic; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits (By similarity). (123 aa)
	infA	Translation initiation factor IF-1, chloroplastic; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. (77 aa)
	rps19-2	30S ribosomal protein S19, chloroplastic; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (92 aa)
	rpl32-2	50S ribosomal protein L32, chloroplastic. (57 aa)
	TIC214	Protein TIC 214; Involved in protein precursor import into chloroplasts. May be part of an intermediate translocation complex acting as a protein- conducting channel at the inner envelope. (1893 aa)
	PsbA	Photosystem II protein D1; Belongs to the reaction center PufL/M/PsbA/D family. (684 aa)

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PsbA	TIC214	F6HNS1	Q0ZIW0	Photosystem II protein D1; Belongs to the reaction center PufL/M/PsbA/D family.	Protein TIC 214; Involved in protein precursor import into chloroplasts. May be part of an intermediate translocation complex acting as a protein- conducting channel at the inner envelope.	0.691
PsbA	accD	F6HNS1	Q0ZJ11	Photosystem II protein D1; Belongs to the reaction center PufL/M/PsbA/D family.	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.	0.822
PsbA	infA	F6HNS1	Q0ZIY4	Photosystem II protein D1; Belongs to the reaction center PufL/M/PsbA/D family.	Translation initiation factor IF-1, chloroplastic; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.	0.702
PsbA	matK	F6HNS1	Q0ZJ39	Photosystem II protein D1; Belongs to the reaction center PufL/M/PsbA/D family.	Maturase K; Usually encoded in the trnK tRNA gene intron. Probably assists in splicing its own and other chloroplast group II introns. Belongs to the intron maturase 2 family. MatK subfamily.	0.694
PsbA	psaA	F6HNS1	Q0ZJ20	Photosystem II protein D1; Belongs to the reaction center PufL/M/PsbA/D family.	Photosystem I P700 chlorophyll a apoprotein A1; PsaA and PsaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX. PSI is a plastocyanin-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn. Oxidized P700 is reduced on the lumenal side of the thylakoid membrane by plastocyanin.	0.942
PsbA	psaB	F6HNS1	Q0ZJ21	Photosystem II protein D1; Belongs to the reaction center PufL/M/PsbA/D family.	Photosystem I P700 chlorophyll a apoprotein A2; PsaA and PsaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX. PSI is a plastocyanin-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn. Oxidized P700 is reduced on the lumenal side of the thylakoid membrane by plastocyanin.	0.941
PsbA	psaI	F6HNS1	Q0ZJ10	Photosystem II protein D1; Belongs to the reaction center PufL/M/PsbA/D family.	Photosystem I reaction center subunit VIII; May help in the organization of the PsaL subunit. Belongs to the PsaI family.	0.893
PsbA	psbA	F6HNS1	Q0ZJ40	Photosystem II protein D1; Belongs to the reaction center PufL/M/PsbA/D family.	Photosystem II protein D1; Photosystem II (PSII) is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1/D2 (PsbA/PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors.	0.900
PsbA	rpl32	F6HNS1	B6VJW3	Photosystem II protein D1; Belongs to the reaction center PufL/M/PsbA/D family.	Ribosomal protein L32.	0.726
PsbA	rpl32-2	F6HNS1	Q0ZIX0	Photosystem II protein D1; Belongs to the reaction center PufL/M/PsbA/D family.	50S ribosomal protein L32, chloroplastic.	0.726
PsbA	rps12	F6HNS1	B6VJX1	Photosystem II protein D1; Belongs to the reaction center PufL/M/PsbA/D family.	Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	0.684
PsbA	rps12-A	F6HNS1	Q0ZIZ5	Photosystem II protein D1; Belongs to the reaction center PufL/M/PsbA/D family.	30S ribosomal protein S12, chloroplastic; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits (By similarity).	0.727
PsbA	rps16	F6HNS1	Q0ZJ38	Photosystem II protein D1; Belongs to the reaction center PufL/M/PsbA/D family.	30S ribosomal protein S16, chloroplastic.	0.790
PsbA	rps19	F6HNS1	A5BWS8	Photosystem II protein D1; Belongs to the reaction center PufL/M/PsbA/D family.	Ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family.	0.620
PsbA	rps19-2	F6HNS1	Q0ZIX8	Photosystem II protein D1; Belongs to the reaction center PufL/M/PsbA/D family.	30S ribosomal protein S19, chloroplastic; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.711
TIC214	PsbA	Q0ZIW0	F6HNS1	Protein TIC 214; Involved in protein precursor import into chloroplasts. May be part of an intermediate translocation complex acting as a protein- conducting channel at the inner envelope.	Photosystem II protein D1; Belongs to the reaction center PufL/M/PsbA/D family.	0.691
TIC214	accD	Q0ZIW0	Q0ZJ11	Protein TIC 214; Involved in protein precursor import into chloroplasts. May be part of an intermediate translocation complex acting as a protein- conducting channel at the inner envelope.	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.	0.758
TIC214	infA	Q0ZIW0	Q0ZIY4	Protein TIC 214; Involved in protein precursor import into chloroplasts. May be part of an intermediate translocation complex acting as a protein- conducting channel at the inner envelope.	Translation initiation factor IF-1, chloroplastic; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.	0.665
TIC214	matK	Q0ZIW0	Q0ZJ39	Protein TIC 214; Involved in protein precursor import into chloroplasts. May be part of an intermediate translocation complex acting as a protein- conducting channel at the inner envelope.	Maturase K; Usually encoded in the trnK tRNA gene intron. Probably assists in splicing its own and other chloroplast group II introns. Belongs to the intron maturase 2 family. MatK subfamily.	0.678
TIC214	psaA	Q0ZIW0	Q0ZJ20	Protein TIC 214; Involved in protein precursor import into chloroplasts. May be part of an intermediate translocation complex acting as a protein- conducting channel at the inner envelope.	Photosystem I P700 chlorophyll a apoprotein A1; PsaA and PsaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX. PSI is a plastocyanin-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn. Oxidized P700 is reduced on the lumenal side of the thylakoid membrane by plastocyanin.	0.638