(28 nodes) (2017) Genome-wide identification of conserved and novel microRNAs in one bud and two tender leaves of tea plant (Camellia sinensis) by small RNA sequencing, microarray-based hybridization and genome survey scaffold sequences. network (Vitis vinifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6HGU6_VITVI	Phenylalanine ammonia-lyase. (895 aa)
	F3H	Flavanone 3-hydroxylase; Belongs to the iron/ascorbate-dependent oxidoreductase family. (363 aa)
	ANS	Leucocyanidin oxygenase; Belongs to the iron/ascorbate-dependent oxidoreductase family. (355 aa)
	myb15	R2R3 MYB15 transcription factor. (253 aa)
	PAL1	Phenylalanine ammonia-lyase. (717 aa)
	F3'H	Uncharacterized protein; Belongs to the cytochrome P450 family. (509 aa)
	LAR2	NmrA domain-containing protein. (358 aa)
	UFGT	Glycosyltransferase; Belongs to the UDP-glycosyltransferase family. (456 aa)
	D7TCJ8_VITVI	Phenylalanine ammonia-lyase. (665 aa)
	ANR	Anthocyanidin reductase ((2S)-flavan-3-ol-forming); Produces the terminal flavan-3-ol monomers required for the formation of proanthocyanidins or condensed tannins in leaves and flowers, as well as in the skin and seeds of developing berries. Behaves as a reductase and as a C-3 epimerase. Catalyzes the double reduction of anthocyanidins, producing a mixture of (2S,3S)- and (2S,3R)-flavan-3-ols. The enzyme catalyzes sequential hydride transfers to C-2 and C-4, respectively and epimerization at C-3 is achieved by tautomerization that occurs between the two hydride transfers. Converts cya [...] (338 aa)
	F6H0B9_VITVI	Uncharacterized protein. (549 aa)
	F6H0C0_VITVI	Uncharacterized protein. (549 aa)
	F6H2I9_VITVI	Epimerase domain-containing protein. (402 aa)
	F6HEB0_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	F6HEB1_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	F6HEB2_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	F6HEB3_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	PAL	Phenylalanine ammonia-lyase. (710 aa)
	F6HEB8_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	PAL-2	Phenylalanine ammonia-lyase. (710 aa)
	PAL-3	Phenylalanine ammonia-lyase. (734 aa)
	F6HEC2_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	4CL	Uncharacterized protein. (548 aa)
	PAL7	Phenylalanine ammonia-lyase. (723 aa)
	PAL2	Phenylalanine ammonia-lyase. (710 aa)
	F6HS12_VITVI	Phenylalanine ammonia-lyase. (469 aa)
	F6I2I6_VITVI	Uncharacterized protein. (308 aa)
	lar1	Leucoanthocyanidin reductase 1. (346 aa)

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
4CL	ANR	F6HEF8	D7U6G6	Uncharacterized protein.	Anthocyanidin reductase ((2S)-flavan-3-ol-forming); Produces the terminal flavan-3-ol monomers required for the formation of proanthocyanidins or condensed tannins in leaves and flowers, as well as in the skin and seeds of developing berries. Behaves as a reductase and as a C-3 epimerase. Catalyzes the double reduction of anthocyanidins, producing a mixture of (2S,3S)- and (2S,3R)-flavan-3-ols. The enzyme catalyzes sequential hydride transfers to C-2 and C-4, respectively and epimerization at C-3 is achieved by tautomerization that occurs between the two hydride transfers. Converts cya [...]	0.682
4CL	ANS	F6HEF8	A2ICC9	Uncharacterized protein.	Leucocyanidin oxygenase; Belongs to the iron/ascorbate-dependent oxidoreductase family.	0.712
4CL	D7TCJ8_VITVI	F6HEF8	D7TCJ8	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.848
4CL	F3'H	F6HEF8	A5C6P2	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.672
4CL	F3H	F6HEF8	A2ICC8	Uncharacterized protein.	Flavanone 3-hydroxylase; Belongs to the iron/ascorbate-dependent oxidoreductase family.	0.806
4CL	F6H2I9_VITVI	F6HEF8	F6H2I9	Uncharacterized protein.	Epimerase domain-containing protein.	0.664
4CL	F6HEB0_VITVI	F6HEF8	F6HEB0	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.944
4CL	F6HEB1_VITVI	F6HEF8	F6HEB1	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.849
4CL	F6HEB2_VITVI	F6HEF8	F6HEB2	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.944
4CL	F6HEB3_VITVI	F6HEF8	F6HEB3	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.945
4CL	F6HEB8_VITVI	F6HEF8	F6HEB8	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.944
4CL	F6HEC2_VITVI	F6HEF8	F6HEC2	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.945
4CL	F6HGU6_VITVI	F6HEF8	F6HGU6	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.852
4CL	F6HS12_VITVI	F6HEF8	F6HS12	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.852
4CL	F6I2I6_VITVI	F6HEF8	F6I2I6	Uncharacterized protein.	Uncharacterized protein.	0.847
4CL	LAR2	F6HEF8	D7SIV3	Uncharacterized protein.	NmrA domain-containing protein.	0.616
4CL	PAL	F6HEF8	F6HEB5	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.944
4CL	PAL-2	F6HEF8	F6HEB9	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.946
4CL	PAL-3	F6HEF8	F6HEC0	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.946
4CL	PAL1	F6HEF8	A5BPT8	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.946